PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_181860_xcez.t1
Common NameSOVF_181860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 971aa    MW: 110527 Da    PI: 9.4191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_181860_xcez.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15361171399
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++ lvlp kf+++++   + + +++l+ +sg +We++l   k  +   + ++GWk+Fvk n+Lke+ ++v+k++++s+f   v +f++
  Sp_181860_xcez.t1  36 HDHLVLPEKFTAHMK--AHLPDKVSLKGPSGAKWEIEL--LKAADDiLFVGDGWKDFVKVNKLKENYVLVLKFNRNSSF--EVLIFDQ 117
                        455*******95554..458889***************..66666659999**********************999999..8888876 PP
2B331.14e-10494578190
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+ ++ ps+v ++  l +p k +++h  + k+    ++l     r+W   l    + ++  +++GWk+F+ +n L+e D++vF +++++++
  Sp_181860_xcez.t1 494 FIAIMRPSSVYNRFFLNIPAKWMQQHlPYRKQ---RVIL-RVGERKWHTSL--FVYAKGAGISAGWKKFALDNFLEEFDVLVFNVVSQEDE 578
                        788999******************99644432...3554.5588*******..666666779**********************8876665 PP
3B338.52e-12857946192
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        f+ v+ ps+v ++  +++p + ++++  +++ +  + +    + ++W + + y  +++ g  + ++GWk+Fv++n L+e D+++Fkl + ++
  Sp_181860_xcez.t1 857 FVVVMRPSSVYRRFYMSIPAEWMNKNlALQS-Q--EFV-LGVEDKTWVISFYYnfKRGTG-GLCGEGWKKFVRDNSLEEFDVLLFKLPNPNN 943
                        78899*******************9965543.3..344.455668887777664244444.68999********************865555 PP

                        E.. CS
                 B3  90 fel 92 
                        ++ 
  Sp_181860_xcez.t1 944 ATI 946
                        554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1924117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.39524118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1926118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-1726116No hitNo description
SMARTSM010191.4E-1727118IPR003340B3 DNA binding domain
PfamPF023624.6E-1336117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-17490586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-14492576IPR015300DNA-binding pseudobarrel domain
CDDcd100176.11E-14493570No hitNo description
SMARTSM010190.0021494591IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757494586IPR003340B3 DNA binding domain
PfamPF023622.0E-8494578IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16851954IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-15854954IPR015300DNA-binding pseudobarrel domain
CDDcd100179.73E-18856954No hitNo description
SMARTSM010199.2E-8857956IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984857956IPR003340B3 DNA binding domain
PfamPF023621.8E-11857948IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
MTENSECSYC KTWEEEMYWK HFNLMHFLQI LTPNFHDHLV LPEKFTAHMK AHLPDKVSLK  60
GPSGAKWEIE LLKAADDILF VGDGWKDFVK VNKLKENYVL VLKFNRNSSF EVLIFDQETS  120
CEKEISYFVK KCSHVKSDNE VQKKTIAREA STEIIGDDEG EKDSGFEVSK KSKKDDQVVA  180
FSEQVNTQAS RKRGPSKARG KPTRILPCRL PVKRKFQSGK KSLGNETAKE PIEISQRDML  240
TPENGESIPA KGHSDRLVSH SKKSVNIAKK VSQNSRTELI PPENGENSAT ADHSEKSKGQ  300
SEEHVAEEQP SGNHIANEPK LISEMDFDTT ENEESFRARD HLPKLKPQSE MRPSSNGTSK  360
EPRQVVEKEL IAPENGKNFP ETDCSNGFKG QAEKEPSGRR GIVKEPSPVS GRKVIRPNYK  420
DNSSEEDHSS KSRGKRGRPK KQVLPISSKK LEFRSVSDER KFSKEYMSNR RPVTEEEKEQ  480
AVQRANQIQT ENSFIAIMRP SSVYNRFFLN IPAKWMQQHL PYRKQRVILR VGERKWHTSL  540
FVYAKGAGIS AGWKKFALDN FLEEFDVLVF NVVSQEDEII VVMDVDICRV VQKVKSKKDV  600
DREVNCAERE ENTQNPKSQL STDIRRRLRK VQPRKHPFTC VHESRIFLAQ SGELVERPIA  660
EEKQPSINVA TQEPTQISLR EMTTPQNGET SPTKDHSDKF KDQIVDLAEK SPGGNDIGQE  720
LSPNSGRDWS TPGPEDEEDS SETNHPHKVN SLSGKEPTEN GTAKKMSRFL SKGPIVLNFR  780
ECSPEADDSH KSIRKRGRAG RPKKLALPKS LIKQAPRSVS AGRKGTPEYV SNRREVTLME  840
KEDALQRANQ ERTENSFVVV MRPSSVYRRF YMSIPAEWMN KNLALQSQEF VLGVEDKTWV  900
ISFYYNFKRG TGGLCGEGWK KFVRDNSLEE FDVLLFKLPN PNNATIVFDV EIFRVVPKIL  960
PPLLVNSSIL A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1624629RRRLRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849698.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A0K9QIC10.0A0A0K9QIC1_SPIOL; Uncharacterized protein
STRINGXP_010675171.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-37B3 family protein