PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_177340_cfmo.t1
Common NameSOVF_177340
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 463aa    MW: 50889 Da    PI: 4.7572
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_177340_cfmo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.71.2e-301012012103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        Fl+k+y++++d++++ +isw ++g+sfv++d+ +fa+ vLp+ Fkh+nf+SFvRQLn+Y g +     ++ +k +++ weF+++ F +gk++
  Sp_177340_cfmo.t1 101 FLSKTYDLVDDPAINLIISWGSRGQSFVIWDPVDFARIVLPRNFKHNNFSSFVRQLNTYyGVSPYY--KGFRKVDPDKWEFANEGFLRGKRH 190
                        9********************************************************983322222..2222345778************** PP

                        XXXXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkkse 103
                        ll++i+r+ks+
  Sp_177340_cfmo.t1 191 LLKNIHRRKSS 201
                        ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.0E-5197198IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3197198IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3398198IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-27101198IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11101124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11139151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-11152164IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDSDDKMFSP TIPTSSSAPI PTVSSSSFDT PVIFSSYPDP FFSTGFSVPS SLPPLSPSSL  60
NFQSFSSPPP HFPNVISEGT LEIEKNPRPL ECLQGTPIPP FLSKTYDLVD DPAINLIISW  120
GSRGQSFVIW DPVDFARIVL PRNFKHNNFS SFVRQLNTYY GVSPYYKGFR KVDPDKWEFA  180
NEGFLRGKRH LLKNIHRRKS SQSQQLTSYG VGGSSCSESG LGSEIEKLRK EKSALLQEVV  240
ELQEQQRGTA ERVKSVKDKI QASEQRQKQM VSFLAKVIQN PVFVKEMKEQ TTLVSQSPRK  300
FLKQTQQEAG NSGTFMEGQV VKYRPEFQYM GEIPMSTVQD NLLQSIPFQD VDVSLDDLAT  360
SQELMTIPGS FGAGLPSSGI IPEFSPEIGN MGFDLSTDVS SCSPELWGNI ASNGIPDVGT  420
CFPGEFSDVF DLGSLQAAGV GVDNCLGDDS SAGHPENQSV SHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-219820317125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839148.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-3-like
TrEMBLA0A0K9QJU90.0A0A0K9QJU9_SPIOL; Uncharacterized protein
STRINGXP_010683874.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-80heat shock transcription factor A3