PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_175790_efrn.t1 | ||||||||
Common Name | SOVF_175790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 476aa MW: 52829.9 Da PI: 6.4608 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.4 | 2.9e-49 | 29 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee..............v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhPtdeel+++yL+ kv +++++++ v + evd++++ePwdLp+++k +e+ewy Fs rd+ky++g r+nra Sp_175790_efrn.t1 29 LPPGFRFHPTDEELITFYLASKVFNTTTTTTAtnntttnlflsnsdVqMVEVDLTRCEPWDLPERAKMGEREWYLFSLRDRKYPSGLRTNRA 120 79*********************9999444334566677777777755***************99999************************ PP NAM 78 tksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 t++gyWkatgkd++v++ +g l+g+kktLvfy+grap+g+kt+Wvmheyrl Sp_175790_efrn.t1 121 TETGYWKATGKDRQVYAGgittaaggaGGVLIGMKKTLVFYQGRAPRGVKTSWVMHEYRL 180 *****************87766666666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-57 | 25 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.571 | 29 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-26 | 30 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MWRVEDVLKD LKEEGVYGNC CEKEESTGLP PGFRFHPTDE ELITFYLASK VFNTTTTTTA 60 TNNTTTNLFL SNSDVQMVEV DLTRCEPWDL PERAKMGERE WYLFSLRDRK YPSGLRTNRA 120 TETGYWKATG KDRQVYAGGI TTAAGGAGGV LIGMKKTLVF YQGRAPRGVK TSWVMHEYRL 180 DGHFSSFRLS SKEEWVICRI CHKNAEKKLS PLIIHPPPSP PPTPQRRPLS PFLSSLPPLA 240 DPPSTTQEVA DTPSQHRNYA NSHDLLHSLL LNPLPNFSSI SGSNTIFPPL NTTTTNTTTT 300 AASIDMSPSS TLFKSFHHPS LCCLSSTTTN TNTNTNTNTT AAVASSTTAS DVTKQWQPQQ 360 HWLDRICPQN EYMIQNQYHH DPVNFNQMMD PQPLPNTYPT TTTTTISSTA AIGNNNHDDE 420 DGDAAVHLEM SPSVAVAALD WMLNHTINNN NTNDNHPHPP PAAAAAAESW CFQIHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-46 | 22 | 206 | 8 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021852146.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 4e-78 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0K9QIE0 | 0.0 | A0A0K9QIE0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686786.1 | 1e-135 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 3e-73 | NAC family protein |
Publications ? help Back to Top | |||
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