PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_175350_uqhr.t1
Common NameSOVF_175350
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 427aa    MW: 46775.3 Da    PI: 7.5133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_175350_uqhr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27191249259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D+++WrKYGqK++kgs++pr+YYrC+s  gC+++k+vers  dp + ++tY+++H+h+
  Sp_175350_uqhr.t1 191 NDKWAWRKYGQKPIKGSPYPRNYYRCSSIkGCKARKQVERSPIDPLIYIVTYTDHHHHP 249
                        7*************************9987****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-29177251IPR003657WRKY domain
SuperFamilySSF1182909.42E-25184251IPR003657WRKY domain
SMARTSM007746.6E-31190250IPR003657WRKY domain
PROSITE profilePS5081129.287191251IPR003657WRKY domain
PfamPF031062.6E-23191249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGETTEINDC WSLLAVVKEC ARKAKLRADQ STLTATTTTT ATTATTTTTA ANHGCPGTSQ  60
SYSQNPFYNQ FVPKNNSVGF MLPSAAGVAP AADGSVSEDE LTNLYKPFLM TYHGPVISTT  120
IKAEPVVEVS GINSSNNNLD LLIDQQNLHL RNFQISPKQS SSSTAVGCIY KKKKFEDRRV  180
VKYTLEELSK NDKWAWRKYG QKPIKGSPYP RNYYRCSSIK GCKARKQVER SPIDPLIYIV  240
TYTDHHHHPC PPTRNSSGPR VKITMPDPIP SPKIESPTSI VPVPKYGYGL SGNNGVKIEF  300
EDLDGEKSFG SGSMDEDHDI SMADSGTLTG MEQLNGGGKC PSPSSSGHSN SYYYNENHVG  360
YYNKGCDPNV KMEVQLEENG LSGYDIGIRE MYGSAPATLA EAHEAPSNMG RQNIWGNGVN  420
KAQTFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-161912521575WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844186.10.0probable WRKY transcription factor 27
TrEMBLA0A0K9QIJ90.0A0A0K9QIJ9_SPIOL; Uncharacterized protein
STRINGXP_010671600.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-33WRKY DNA-binding protein 27