PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_174540_pitr.t1

Common Name

SOVF_174540

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

VOZ

Protein Properties

Length: 484aa MW: 54337.1 Da PI: 5.69

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_174540_pitr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	440	2.9e-135	208	424	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 pppsaflgpkcalwdc+rpaqgs+w+qdycssfhatlalneg+pg+tpvlrp+gi+lkdgllfaalsakvqgk+vgip cegaatakspwna Sp_174540_pitr.t1 208 PPPSAFLGPKCALWDCPRPAQGSDWWQDYCSSFHATLALNEGPPGMTPVLRPGGIGLKDGLLFAALSAKVQGKDVGIPACEGAATAKSPWNA 299 89**************************************************************************************** PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyr 184 +elfdl +legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm ef+glkrsyymdpqp++++ewhlyeyein++d +alyr Sp_174540_pitr.t1 300 PELFDLLVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMDEFNGLKRSYYMDPQPLNNYEWHLYEYEINKCDVCALYR 391 **************************************************************************************** PP VOZ 185 lelklvdekksakgkvskdsladlqkklgrlta 217 lelklvd kk+++gk +ds+++lqk++grlta Sp_174540_pitr.t1 392 LELKLVDRKKTPRGKSGNDSVSELQKQMGRLTA 424 *****************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MRKGLKRNGC KSASHQLFKD RAKNRVDDLQ MIFSDLQSAR KDSRTVDAAV LEEQVYLMLR 60 EWKSELNEPS PAPSVQNDSL GTFSSDIYRL LHLCDEEDDA TSPFELPLPK SEPDVQKFQA 120 VDAIGFQEGP EVKPGSQEPN FSSVDQCKGS PGFRSLTTTN MEMANQLDYN QFNLHVDLEH 180 HYFGGYSGVD VGALYAHPIS GFLPNVCPPP SAFLGPKCAL WDCPRPAQGS DWWQDYCSSF 240 HATLALNEGP PGMTPVLRPG GIGLKDGLLF AALSAKVQGK DVGIPACEGA ATAKSPWNAP 300 ELFDLLVLEG ETIREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMDEFNGLKR 360 SYYMDPQPLN NYEWHLYEYE INKCDVCALY RLELKLVDRK KTPRGKSGND SVSELQKQMG 420 RLTAEFPLDN RRPLKGRTKF NSKDGVGNLQ SDPNELINGD KTFDHGVGAP YGYLVENIGD 480 YYLK

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MRKGLKRNGC KSASHQLFKD RAKNRVDDLQ MIFSDLQSAR KDSRTVDAAV LEEQVYLMLR  60
EWKSELNEPS PAPSVQNDSL GTFSSDIYRL LHLCDEEDDA TSPFELPLPK SEPDVQKFQA  120
VDAIGFQEGP EVKPGSQEPN FSSVDQCKGS PGFRSLTTTN MEMANQLDYN QFNLHVDLEH  180
HYFGGYSGVD VGALYAHPIS GFLPNVCPPP SAFLGPKCAL WDCPRPAQGS DWWQDYCSSF  240
HATLALNEGP PGMTPVLRPG GIGLKDGLLF AALSAKVQGK DVGIPACEGA ATAKSPWNAP  300
ELFDLLVLEG ETIREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMDEFNGLKR  360
SYYMDPQPLN NYEWHLYEYE INKCDVCALY RLELKLVDRK KTPRGKSGND SVSELQKQMG  420
RLTAEFPLDN RRPLKGRTKF NSKDGVGNLQ SDPNELINGD KTFDHGVGAP YGYLVENIGD  480
YYLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021844129.1	0.0	transcription factor VOZ1
Refseq	XP_021844130.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0K9QIS6	0.0	A0A0K9QIS6_SPIOL; Uncharacterized protein
STRING	XP_010686387.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]