PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_172350_xysh.t1

Common Name

SOVF_172350

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 191aa MW: 22309.9 Da PI: 4.7099

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_172350_xysh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.6	3.5e-34	7	126	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Ptdeelvv++L++k + + + ++i+++d+y ++PwdL+ k+ +e ++wy++s++ +nr+ +sgyWk+ g d+++ Sp_172350_xysh.t1 7 LPPGFRFCPTDEELVVHFLRRKDDLLPYHP-DIIPDLDVYPYNPWDLQGKALSEGNKWYYYSRK--------MQNRVSDSGYWKQMGMDEPI 89 79***********************988.89***********77778899*997........45899************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ ++ vg+kk vf+ g+ ++ + t+W+mheyrl Sp_172350_xysh.t1 90 MSSsCRKIVGIKKYYVFHIGDPSNDVWTSWIMHEYRL 126 9977888**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-45	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	42.984	7	158	IPR003441	NAC domain
Pfam	PF02365	1.9E-21	8	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MGDNNNLPPG FRFCPTDEEL VVHFLRRKDD LLPYHPDIIP DLDVYPYNPW DLQGKALSEG 60 NKWYYYSRKM QNRVSDSGYW KQMGMDEPIM SSSCRKIVGI KKYYVFHIGD PSNDVWTSWI 120 MHEYRLPDSG SSSKSTSRKR GNPKLDYSKR VICKVFEQRN DDDDGDNDTE LSCLDEVFLS 180 MDDLDEISLP N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-33	6	161	16	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-33	6	161	16	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-33	6	161	16	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-33	6	161	16	168	NO APICAL MERISTEM PROTEIN
3swm_A	7e-33	6	160	19	170	NAC domain-containing protein 19
3swm_B	7e-33	6	160	19	170	NAC domain-containing protein 19
3swm_C	7e-33	6	160	19	170	NAC domain-containing protein 19
3swm_D	7e-33	6	160	19	170	NAC domain-containing protein 19
3swp_A	7e-33	6	160	19	170	NAC domain-containing protein 19
3swp_B	7e-33	6	160	19	170	NAC domain-containing protein 19
3swp_C	7e-33	6	160	19	170	NAC domain-containing protein 19
3swp_D	7e-33	6	160	19	170	NAC domain-containing protein 19
4dul_A	7e-33	6	161	16	168	NAC domain-containing protein 19
4dul_B	7e-33	6	161	16	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860940.1	1e-140	NAC domain-containing protein 104
Swissprot	Q8GWK6	8e-76	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0K9QJG5	1e-138	A0A0K9QJG5_SPIOL; Uncharacterized protein
STRING	XP_010687465.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-75	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]