PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_172040_pmpz.t2 | ||||||||
Common Name | SOVF_172040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 41827.6 Da PI: 4.6876 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 88 | 138 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr++ +g+WvAeIr+p + r kr +lg++ ta eAa +++a+++++ge Sp_172040_pmpz.t2 88 KYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTYPTALEAALSYDEAARAMYGE 138 7*****999.**********8...3.35*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 88 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 88 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 88 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.49E-30 | 88 | 146 | No hit | No description |
SMART | SM00380 | 2.1E-35 | 88 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-20 | 88 | 146 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-8 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGTFHYDKAS SNTHCSSSVP FDCTRRRKTR RRCDGTDSLA DTLAKWKEIN EKLCEQKEDG 60 KPVRKAPAKG SKKGCMKGKG GPENSLFKYR GVRQRTWGKW VAEIREPNRG KRLWLGTYPT 120 ALEAALSYDE AARAMYGESA RLNLPYYPAP VREDSRDDSA SASYTTATTT SASYTTACTT 180 SGNNSDVYVG EQWDGVTGGA TVKREDIEGD SEFDFKNASA GFKVGTPGTP VDKEEKAVVD 240 NGEGDQGGID INDYLHNLTM DEMFDVDELL GAIDAGPVSP VGNTTTQGHD AYGAFRSQVE 300 NNSIQLERPE SWSNHEQNPN YFHLFQNQDD VNLYGSVNNS DQGYNGVNYG FDFLNPDRQE 360 DSSLPVEDHG FLNLGELGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-16 | 89 | 145 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 28 | TRRRKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855822.1 | 0.0 | dehydration-responsive element-binding protein 2C-like isoform X1 | ||||
TrEMBL | A0A0K9QJK1 | 0.0 | A0A0K9QJK1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692919.1 | 1e-143 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-38 | ERF family protein |