PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_169590_jqkq.t1
Common NameSOVF_169590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 342aa    MW: 39014.9 Da    PI: 7.9784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_169590_jqkq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.32.7e-48231683128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pGfrFhPtdeelv++yLk+kve+++    e+ik+vdiyk++PwdL   + + ++kewyf++kr +ky+++ r+nr+t sg+Wkatg d++++
  Sp_169590_jqkq.t1  23 PGFRFHPTDEELVSFYLKRKVEKRRPLSIEIIKQVDIYKHDPWDLAkGSSSIGDKEWYFYCKRGRKYRNSIRPNRVTGSGFWKATGIDRPIY 114
                        9**********************99555599**************844666699************************************** PP

                NAM  94 sk.........kgel............vglkktLvfykgrapkgektdWvmheyrl 128
                        s+         +  +            +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Sp_169590_jqkq.t1 115 SNnvndggeghS--QsqsqsqsqsqhcIGLKKSLVYYRGSAGKGSKTDWMMHEFRL 168
                        *87777665550..0556677788888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4920199IPR003441NAC domain
PROSITE profilePS5100549.84421200IPR003441NAC domain
PfamPF023651.5E-2423168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSTNTKEDDD VVVGVDDEEG PLPGFRFHPT DEELVSFYLK RKVEKRRPLS IEIIKQVDIY  60
KHDPWDLAKG SSSIGDKEWY FYCKRGRKYR NSIRPNRVTG SGFWKATGID RPIYSNNVND  120
GGEGHSQSQS QSQSQSQHCI GLKKSLVYYR GSAGKGSKTD WMMHEFRLPN QIHQHHNPNP  180
NPKDTALEAE IWTLCRIFKR YKRHTPDWRE LSRSKNAVNS SSKTSSIDSN TNQECYISFG  240
THQAAAALDN GYNNLLVVNQ GDNNNNNTNN IYTGNQNITT GSHADHQQWN LMSHTPSCTS  300
RPSTMSHVLT NDGNDLQNFA YYQHNWDDLN SVVELAVKNP FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-422319817166Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854333.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-76NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0K9QKB80.0A0A0K9QKB8_SPIOL; Uncharacterized protein
STRINGXP_010693169.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-73NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]