PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_169420_jssj.t1
Common NameSOVF_169420
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 523aa    MW: 58231 Da    PI: 5.2361
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_169420_jssj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.49.6e-13136233291
               FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerr......traetrtgCkaklkvkkekdgkwevtklele 84 
                        +Y++Y+k+ GF +++  + ++ k++g   ++t++C + g ++ +++   t  +++        ++++++C akl     +dg+w v++++le
  Sp_169420_jssj.t1 136 YYKAYGKQQGFLIVRGGNGYQwKNKGVKRSATWTCDCAGLPRVRERGksT--TQQaltsapLVKSKKCQCPAKLYAVVCSDGNWLVKHVVLE 225
                        9***********999988777699999999*********99988877332..33333444456899************************** PP

               FAR1  85 H.nHelap 91 
                        H nH+l+p
  Sp_169420_jssj.t1 226 HmNHTLSP 233
                        *99*9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-11135233IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGAPDSATID NPCSSATLQS VTDPVLVNSG EENSVEIENE KIMGNESADE RICNLFNVDL  60
DSTTVDFEAA GIEEVEEMES STLNGDMDND ICQSSAKTYN GADPIEVNDL LKNLDIPLET  120
PSAGMIFLSE DDVERYYKAY GKQQGFLIVR GGNGYQWKNK GVKRSATWTC DCAGLPRVRE  180
RGKSTTQQAL TSAPLVKSKK CQCPAKLYAV VCSDGNWLVK HVVLEHMNHT LSPNKFGSTP  240
DCRKLPSNDV KQKLLTDIEG GISHAQPLAF LLPKRNDMDQ KPFGRVINLE AVDVSEGEKM  300
MPSLLNKEVD EDICKTSAKA CNVRDTLEVD DLLKNLNNTM LEPPRVGMGF SSDEEIEKYY  360
KAFAKQQGFQ AVRHGTGYHW KNKGVKRAAT WTCDCAGLPR IQDRPQMIRY DKMQLEFDVV  420
ANLAMKSDDL CASVMQGIHE LKRKVEEADG QRLSRCNTTV VSVDHIGNDN ESIVTTKRKE  480
MITKYPPRRA KICRSSEIVE MPLAEMSVQN KRARPEQTLS QVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867301.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_021867302.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBLA0A0K9QM020.0A0A0K9QM02_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-07FAR1-related sequence 6