PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_166320_mrji.t1
Common NameSOVF_166320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 308aa    MW: 34785.2 Da    PI: 5.3366
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_166320_mrji.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.5e-1839100257
                        T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++R+t+t+eq++ L+el++    r p+a++++ + ++l    +++ ++V++WFqN++a+e++
  Sp_166320_mrji.t1  39 STRWTPTSEQITLLKELYYIngVRSPTADQIQTICARLirygKIEGKNVFYWFQNHKARERQ 100
                        58****************95459*************************************97 PP
2Wus_type_Homeobox1085.5e-3538102265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt+eQi++L+ely+ +G+r+P++++iq i a+L +yGkie+kNVfyWFQN+kaRerqk+
  Sp_166320_mrji.t1  38 SSTRWTPTSEQITLLKELYYiNGVRSPTADQIQTICARLIRYGKIEGKNVFYWFQNHKARERQKK 102
                        689****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1023102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-623100IPR009057Homeodomain-like
PROSITE profilePS500719.71835101IPR001356Homeobox domain
SMARTSM003890.005337105IPR001356Homeobox domain
CDDcd000868.05E-640102No hitNo description
PfamPF000462.7E-1540100IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYSQQQQQQQ QEDMKMMEIN GGKMGSSNNS NQYLCRESST RWTPTSEQIT LLKELYYING  60
VRSPTADQIQ TICARLIRYG KIEGKNVFYW FQNHKARERQ KKRLTPNSGS PTTTTSTLPT  120
TITATSTTTI PQFHNNFVNN VTLQPTINNP VAGIPCSSSS AGHANAISGD GQFVESFGYG  180
GVTMQNTFRE CSISGGEVIN GRYDVRQWNA VETNYSKLLD KISTLDEYPY TDQDHNNEIE  240
TLPLFPMHNQ EHDNVYDQDQ DQDLYTIKPP SDGYYTTGYR WFNGSGGNTS LELSLNSYGS  300
YAYYSPSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864115.10.0protein WUSCHEL-like
TrEMBLA0A0K9QL890.0A0A0K9QL89_SPIOL; Uncharacterized protein
STRINGXP_010680087.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-37WOX family protein