PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_163090_yefh.t1 | ||||||||
Common Name | SOVF_163090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | EIL | ||||||||
Protein Properties | Length: 678aa MW: 75576.9 Da PI: 5.2515 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 513.6 | 8.6e-157 | 56 | 438 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 +el++rmw+d+mllk+lke++k++ ke ++a+k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr Sp_163090_yefh.t1 56 DELERRMWRDRMLLKKLKEQSKDKA--KEG-VDAAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLR 144 79*********************65..888.************************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHH CS EIN3 93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgel 184 aWWkekv+fdrngpaaisky a++ +++++++++t s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+G+e+ww++l Sp_163090_yefh.t1 145 AWWKEKVRFDRNGPAAISKYLADHSLPGSDEDCNT-LASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPSGNEEWWPQL 235 *********************************99.9******************************************************* PP T--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXXXXX CS EIN3 185 glskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqspkv 274 gl+kdqg+ppykkphdlkkawkvsvLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++ ++ +s ++ Sp_163090_yefh.t1 236 GLPKDQGAPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDrcPPPAAGGSGSL 327 *******************************************************************************97778888***** PP XXXXXXXXXXXXXXXXX.XXXXXXXXXX....................................XXXXXXXXXXXXXXXXXXXXX......X CS EIN3 275 tlsceqkedvegkkeskikhvqavktta....................................gfpvvrkrkkkpsesakvsskevsrtcq 330 ++s+ +++dveg + ++v k ++ + ++++krk++p+ +v++++ + c+ Sp_163090_yefh.t1 328 VISDTSDYDVEGVDTDPNSEVDDTKPHNinlfnfdrekfitsnpiigsnpmmtsaikgevidtiTPDFTEKRKQPPH---MVMDQK-IFVCE 415 ***********7666666999999988899********************************999999999996554...444454.599** PP XXXXXX.XXXXXXXXXXXXXXXX CS EIN3 331 ssqfrgsetelifadknsisqne 353 q+++ +t+l+f d+ns+++++ Sp_163090_yefh.t1 416 YPQCPYGDTRLGFLDRNSRNNHQ 438 *********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.7E-131 | 56 | 305 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 4.8E-76 | 178 | 315 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 6.93E-62 | 184 | 308 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MMSSAKMGFV DDMGFCSNFD FFAPPPSMAE EGEGGREAEQ EATGDEDYSD EEVDVDELER 60 RMWRDRMLLK KLKEQSKDKA KEGVDAAKQR QSQEQARRKK MSRAQDGILK YMLKMMEVCK 120 AQGFVYGIIP EKGKPVSGAS DNLRAWWKEK VRFDRNGPAA ISKYLADHSL PGSDEDCNTL 180 ASTPHTLQEL QDTTLGSLLS ALMQHCDPPQ RRFPLEKGVP PPWWPSGNEE WWPQLGLPKD 240 QGAPPYKKPH DLKKAWKVSV LTAVIKHMSP DIAKIRKLVR QSKCLQDKMT AKESATWLAI 300 INQEEALARK LYPDRCPPPA AGGSGSLVIS DTSDYDVEGV DTDPNSEVDD TKPHNINLFN 360 FDREKFITSN PIIGSNPMMT SAIKGEVIDT ITPDFTEKRK QPPHMVMDQK IFVCEYPQCP 420 YGDTRLGFLD RNSRNNHQLN CPYKFSPPTN FQGNNNTEAS NFPTSFVQQE KLPLQSENQT 480 PATFTVSGLE IPEDGQNLIN NLMSVYDTGL QPSKNVGANQ MGGSFVSQGA MFGNSASQGM 540 HINAAKEVQP KVTQFQIENA FLAQGMSLNV NTNPQQKLQF QMSGGVFQGT NINQPEPKMQ 600 QLTIDNSFSG HRGLSGGNMG GSVYPSNAVQ LDHCRTFDSS FGMTLNDNIT DFGYGTPFNL 660 STIDFDQLSR QDNSIWNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 9e-84 | 182 | 314 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 9e-84 | 182 | 314 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859670.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A0K9QM86 | 0.0 | A0A0K9QM86_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694878.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |