PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_162280_gqek.t1

Common Name

SOVF_162280

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SAP

Protein Properties

Length: 388aa MW: 42886 Da PI: 6.2854

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_162280_gqek.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	492.3	2.7e-150	5	387	79	453
SAP 79 vcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvd.edndadalsCrclalsdkylaaGfad 169 vc+twravsrs+llwq+l r +W+ t+l +dtWree+i hrt rnf r sy++l++ v e +d+ l+C +l l+d +la+Gf+d Sp_162280_gqek.t1 5 VCTTWRAVSRSELLWQNLVRIVWNSTNLRHDTWREEFISLHRTCRNFGVSRCSYFVLDHPLGGVRgEGDDPLPLLCLRLVLADDHLAVGFSD 96 9******************************************************9988776515678999*************** PP SAP 170 GavrlfdletrlhvstflpqhrdrlGrfsravsGivisd..srlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvG 259 G+vr+f l +r+h+st++p rdrlG fsravsGiv++ r+vfa+ldGdihva + g + arra+lGdvvndGalvdf G gr+wvG Sp_162280_gqek.t1 97 GSVRMFYLPSRIHLSTVHPLLRDRLGLFSRAVSGIVLEPliDRVVFASLDGDIHVASPLS-GPSLARRAYLGDVVNDGALVDFNGGGRFWVG 187 *********************************963369*********9666.789************************ PP SAP 260 lyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmltel..telvGrvrvteretavaCtslrlvvfdlrnq..gvvlreeeerrGliv 347 lyaGvpGraf++Wda++e+lvf+GGsltdP++vmGWhmlte+ te+vGr+rv+ + a+ tslr +v++l + v++ee +rrG+iv Sp_162280_gqek.t1 188 LYAGVPGRAFRVWDANSEDLVFMGGSLTDPDSVMGWHMLTEIrpTEFVGRIRVAPQGLALGLTSLRALVLNLEEGvsVSVVGEETSRRGIIV 279 **************************************666***********************99743457899999** PP SAP 348 ssldasneayvvvdsrGvatvrrvenleevcrfrvrg...aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddr 436 +s+da+nea+v+vd+rGva+vr +l+evcrf+v++ + g++gC+n+ y+l+++gg +rvW+ ++ e ylys+re +e a+ a dr Sp_162280_gqek.t1 280 GSIDANNEAFVMVDTRGVASVRHLRTLQEVCRFSVSQrqaSLMGLIGCMNNMYVLMCSGGTIRVWDADNGE-YLYSFREWLEEPTAVAATDR 370 *******************************985556678899*****************976.**************** PP SAP 437 hvavsssdgtihlldfg 453 +v ++ss++tihl+dfg Sp_162280_gqek.t1 371 YVVATSSHTTIHLWDFG 387 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	2.07E-5	3	71	IPR001810	F-box domain
SuperFamily	SSF50978	7.14E-17	79	215	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.7E-12	86	218	IPR015943	WD40/YVTN repeat-like-containing domain
Gene3D	G3DSA:2.130.10.10	2.7E-12	271	386	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	7.14E-17	274	385	IPR017986	WD40-repeat-containing domain
PROSITE profile	PS50294	8.545	339	388	IPR017986	WD40-repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009908	Biological Process	flower development
GO:0030163	Biological Process	protein catabolic process
GO:0046622	Biological Process	positive regulation of organ growth
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MSSIVCTTWR AVSRSELLWQ NLVRIVWNST NLRHDTWREE FISLHRTCRN FGVSRCSYFV 60 LDHPLGGVRG EGDDPLPLLC LRLVLADDHL AVGFSDGSVR MFYLPSRIHL STVHPLLRDR 120 LGLFSRAVSG IVLEPLIDRV VFASLDGDIH VASPLSGPSL ARRAYLGDVV NDGALVDFNG 180 GGRFWVGLYA GVPGRAFRVW DANSEDLVFM GGSLTDPDSV MGWHMLTEIR PTEFVGRIRV 240 APQGLALGLT SLRALVLNLE EGVSVSVVGE ETSRRGIIVG SIDANNEAFV MVDTRGVASV 300 RHLRTLQEVC RFSVSQRQAS LMGLIGCMNN MYVLMCSGGT IRVWDADNGE YLYSFREWLE 360 EPTAVAATDR YVVATSSHTT IHLWDFGG

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MSSIVCTTWR AVSRSELLWQ NLVRIVWNST NLRHDTWREE FISLHRTCRN FGVSRCSYFV  60
LDHPLGGVRG EGDDPLPLLC LRLVLADDHL AVGFSDGSVR MFYLPSRIHL STVHPLLRDR  120
LGLFSRAVSG IVLEPLIDRV VFASLDGDIH VASPLSGPSL ARRAYLGDVV NDGALVDFNG  180
GGRFWVGLYA GVPGRAFRVW DANSEDLVFM GGSLTDPDSV MGWHMLTEIR PTEFVGRIRV  240
APQGLALGLT SLRALVLNLE EGVSVSVVGE ETSRRGIIVG SIDANNEAFV MVDTRGVASV  300
RHLRTLQEVC RFSVSQRQAS LMGLIGCMNN MYVLMCSGGT IRVWDADNGE YLYSFREWLE  360
EPTAVAATDR YVVATSSHTT IHLWDFGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866752.1	0.0	transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	1e-129	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A0K9QMH7	0.0	A0A0K9QMH7_SPIOL; Uncharacterized protein
STRING	XP_010689285.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	1e-120	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]