PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_160140_egdw.t1
Common NameSOVF_160140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 637aa    MW: 69491.7 Da    PI: 6.1328
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_160140_egdw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07279299526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C+ Gd C +aHg
  Sp_160140_egdw.t1 279 PCPEFRK-GSCPKGDVCEYAHG 299
                        8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1427154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-1630192IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-973145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008177107IPR002110Ankyrin repeat
PROSITE profilePS5029716.17577152IPR020683Ankyrin repeat-containing domain
CDDcd002041.14E-1279152No hitNo description
PROSITE profilePS5008811.728112147IPR002110Ankyrin repeat
SMARTSM002480.007112144IPR002110Ankyrin repeat
SMARTSM003569.4E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4278301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389279301IPR000571Zinc finger, CCCH-type
SMARTSM0035656309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MCSGSKSKVL TAEEVMESED YKKDTIRDHQ TSLPLLELSA TNDLSSFKDA VEKEGYDLDE  60
ASLWYGRRVG SKKMGFEERT PLMVAAMFGS KDILNYILQT SLVDVNRASG SDGATALHCA  120
AAGGSLYSHE VIKLLVESSA NVDQVDVHGN RPCDVIAPCF SFSSKLKRRT LDILLNKGDE  180
DEDSSDQTEE GIQDLHLEGF SPKSSSDGSG SERKEYPIDP SLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCPK GDVCEYAHGI  300
FECWLHPAQY RTRLCKDEIS CARRVCFFAH RPEELRPLYA STGSAVPSPR SYSSSGPSFD  360
MGSLSPLALG SPSMLMPSTS TPPMTPTGAS SPIGGAAAWQ NHLNITPPPA LQLPGSRLKA  420
ALSSRDLGME TGLRRQQLLD ELATGVLGRL GGLSLSSPTG VQIRQNMNQQ LLSSYSSGMP  480
SSPVRGSCSS FGMEPGGGSP ISNPRLAAFA NRSQSFVDRN AVNRLSGGLA SPFSHISDWG  540
SPDGKVDWGV QGDELNKFRK SASFAYRSSN GNNNSMRGPN GEPDVSWVHS LVKDAPPVNS  600
SSTQHVFEEQ YSLNSGMLER IPPWVEQLYM EQEPMAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852509.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0K9QQB90.0A0A0K9QQB9_SPIOL; Uncharacterized protein
STRINGXP_010685536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-178C3H family protein