PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_155670_kaif.t2

Common Name

SOVF_155670

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 804aa MW: 90628.3 Da PI: 6.5947

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_155670_kaif.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.7e-16	64	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+ GFs+++ ++ + + + t+r+fvC+keg ++++++ C+a+lk++++ +kw vtk+++ HnH+l Sp_155670_kaif.t2 64 FYDEYARLEGFSTKICQTGRFRSDSALTSRQFVCTKEGLKKNSSHV--------------CEAMLKIELK-GSKWAVTKFVKGHNHPLE 137 9************************************9998766..............******.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-13	64	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.399	480	516	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-11	480	514	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.3E-8	491	518	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MSADIIDVED GNMRIRASMD NGDAEAVESG EVTPTGAYMV QDEVIILEPC VGMEFDSESS 60 AKAFYDEYAR LEGFSTKICQ TGRFRSDSAL TSRQFVCTKE GLKKNSSHVC EAMLKIELKG 120 SKWAVTKFVK GHNHPLESPD KVHSIRPHGH FAGTAKNDVE AYQAGVMVPS GVMYVTMDGN 180 HVSQTSVEAN RISPVESNRQ VKSSNGINYA IKPATPRRTW GKDAQNMLDY FKKVQAENPG 240 FFYAIQLDED NRMANAFWAD ARSRTAYSHF GDAAAISQVL PKSRHCLSKW HVLREGQERL 300 AHVCLAHPNF QVELYNCINL TETIDEFESS WDFIIDKYDL RMNDWLQSLY NARRQWVPVY 360 FRDSFFAAVS PNQGVECSFF AGYVNQHTTL PTFFRQYERA MEYWFEKEMD ADFDTISNSP 420 VLSTPSPMEK QAADLYTKKI FSKFQDELVE TFVYTANRID SDGETSTYRV AKFEDDHKAY 480 TVTLNISDMR ASCSCLMFEY SGILCRHILT VFTVTNVLTL PPHYILKRWT RNAKGVVALD 540 EPGADHAQES TPSRYNSLCR EAARYAEVGA TTSDTYAAAL NGLREGAKKI AAVKKIVAKV 600 SPQSFQKSAS GYDDRKNSAA DTPLLWPRQD EVTRQFNLND SAILPHHVSG MNLLRMAPTS 660 VQRDDGPSDN MVVLPCLKSM TWVMENKNST PANRVAVINL KLQDYRKNPA VESEVKFQLS 720 TVTLEPMLKS MAHISEQLST PANRVAVINL KLQDTETISG ESEVKFQVSR DTLGAMLRSM 780 AYIREQLSVL VEPQTEQPQK KQRK

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MSADIIDVED GNMRIRASMD NGDAEAVESG EVTPTGAYMV QDEVIILEPC VGMEFDSESS  60
AKAFYDEYAR LEGFSTKICQ TGRFRSDSAL TSRQFVCTKE GLKKNSSHVC EAMLKIELKG  120
SKWAVTKFVK GHNHPLESPD KVHSIRPHGH FAGTAKNDVE AYQAGVMVPS GVMYVTMDGN  180
HVSQTSVEAN RISPVESNRQ VKSSNGINYA IKPATPRRTW GKDAQNMLDY FKKVQAENPG  240
FFYAIQLDED NRMANAFWAD ARSRTAYSHF GDAAAISQVL PKSRHCLSKW HVLREGQERL  300
AHVCLAHPNF QVELYNCINL TETIDEFESS WDFIIDKYDL RMNDWLQSLY NARRQWVPVY  360
FRDSFFAAVS PNQGVECSFF AGYVNQHTTL PTFFRQYERA MEYWFEKEMD ADFDTISNSP  420
VLSTPSPMEK QAADLYTKKI FSKFQDELVE TFVYTANRID SDGETSTYRV AKFEDDHKAY  480
TVTLNISDMR ASCSCLMFEY SGILCRHILT VFTVTNVLTL PPHYILKRWT RNAKGVVALD  540
EPGADHAQES TPSRYNSLCR EAARYAEVGA TTSDTYAAAL NGLREGAKKI AAVKKIVAKV  600
SPQSFQKSAS GYDDRKNSAA DTPLLWPRQD EVTRQFNLND SAILPHHVSG MNLLRMAPTS  660
VQRDDGPSDN MVVLPCLKSM TWVMENKNST PANRVAVINL KLQDYRKNPA VESEVKFQLS  720
TVTLEPMLKS MAHISEQLST PANRVAVINL KLQDTETISG ESEVKFQVSR DTLGAMLRSM  780
AYIREQLSVL VEPQTEQPQK KQRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021859486.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0K9QRR0	0.0	A0A0K9QRR0_SPIOL; Uncharacterized protein
STRING	XP_004307013.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]