PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_149790_kiiq.t1
Common NameSOVF_149790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 547aa    MW: 60912.3 Da    PI: 9.7469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_149790_kiiq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-081045238
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                       +rW t+E+++l  av ++G+ +W+++a++++ +Rtl+
  Sp_149790_kiiq.t1 10 LRWGTWEELILGGAVLRHGSQNWDAVASELQ-TRTLY 45
                       79*****************************.***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.3E-61143IPR001005SANT/Myb domain
CDDcd001670.007891161No hitNo description
Gene3DG3DSA:1.20.920.102.1E-18313440IPR001487Bromodomain
SuperFamilySSF473701.83E-19315425IPR001487Bromodomain
SMARTSM002976.6E-18320424IPR001487Bromodomain
PfamPF004391.4E-12329407IPR001487Bromodomain
CDDcd043698.13E-7329379No hitNo description
PROSITE profilePS5001410.857335405IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MVEGRGDDTL RWGTWEELIL GGAVLRHGSQ NWDAVASELQ TRTLYPYLFT PQVCKAKYKV  60
LQECNSDCSA WLEELRKKRV TELRRELEKS EESIGSLETK LETLKSEKAV CSYAGHGCSA  120
AESLEPLFKS GENGCAGKEV SQDGSSAGSF TQEIQTIWLP QYQAAVTTEA AVEESDRKPV  180
VLNPSIRLEK FPSLEKLAET MLSEHGVNIR KRRGKRRRKE LNKDGKEGSV GENNLKCLPD  240
STTTTSQAKE NLTSGYVPPV ISPDAKELNK EVKEGSVGEN NSRCLPDSMT TTSQVKENVT  300
SGYVQPAISP DANDQIPCTS QQDTGDFVKI LDSIMENEHA SVFRRRLDSQ KRARYKRIIR  360
QHMDLDTIRS RIANNCITST VELLRDLLLL ANNALVFYSK CTREYKCGLV FRDLVTKILH  420
QHYKENGTIT KRDLITKVLH QHYKEVGAAE TPKSPMRKPP AKPRSVRPFN CKVSKKAENN  480
GQGSSITVAG KESVQAPRIL SSPCSAESTV LTKKTQGKRG KGGRVRRGNA GIQAETPMKV  540
RKRAKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211219RRGKRRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856690.10.0uncharacterized protein LOC110795961 isoform X1
TrEMBLA0A0K9QT290.0A0A0K9QT29_SPIOL; Uncharacterized protein
STRINGXP_010696581.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-12DNA-binding bromodomain-containing protein