PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_144140_rucw.t2

Common Name

SOVF_144140

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

FAR1

Protein Properties

Length: 346aa MW: 39600.6 Da PI: 9.6535

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_144140_rucw.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88	1.4e-27	35	122	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k+++g w++tk+++eH+H+l+p Sp_144140_rucw.t2 35 FYNTYATQLGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDKRE--KVVRQRAETRVGCRAMILVRKMNSGIWVITKCVKEHTHPLTP 122 ****************************************9988..999**********************************986 PP
2	FAR1	83.6	3.1e-26	241	330	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF +r+ + ++s+ +g+i r+f C+keg+ + + k + +++ra+tr gCka++ vk++k+ kw+vt+++++HnH+l+ Sp_144140_rucw.t2 241 EFYDDYARKVGFVMRVMSCRRSEVDGRILARRFGCNKEGYCLSIRGKLGQVKKPRASTRGGCKAMILVKLDKSRKWVVTRFVKDHNHQLV 330 6**************************************9999999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-25	35	122	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.8E-24	241	330	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MNEELSEKEV VPVEEPLNEP FVGQEFESEA AAHAFYNTYA TQLGFVIRVS KLSRSRRDGS 60 AIGRALVCNK EGYRLPDKRE KVVRQRAETR VGCRAMILVR KMNSGIWVIT KCVKEHTHPL 120 TPGKGRKDLI FEQYPNEHDK IRELTQQLAI EKKRAATYKR HLEMVFEHIE EHNQSLSKKI 180 KDINSQKAKV LDFLLLQLMD SDEETGVLET SAKESLDVGG GNGIVEPYEG MVFDSEEEGK 240 EFYDDYARKV GFVMRVMSCR RSEVDGRILA RRFGCNKEGY CLSIRGKLGQ VKKPRASTRG 300 GCKAMILVKL DKSRKWVVTR FVKDHNHQLV ISSREARTKL VSFVCK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MNEELSEKEV VPVEEPLNEP FVGQEFESEA AAHAFYNTYA TQLGFVIRVS KLSRSRRDGS  60
AIGRALVCNK EGYRLPDKRE KVVRQRAETR VGCRAMILVR KMNSGIWVIT KCVKEHTHPL  120
TPGKGRKDLI FEQYPNEHDK IRELTQQLAI EKKRAATYKR HLEMVFEHIE EHNQSLSKKI  180
KDINSQKAKV LDFLLLQLMD SDEETGVLET SAKESLDVGG GNGIVEPYEG MVFDSEEEGK  240
EFYDDYARKV GFVMRVMSCR RSEVDGRILA RRFGCNKEGY CLSIRGKLGQ VKKPRASTRG  300
GCKAMILVKL DKSRKWVVTR FVKDHNHQLV ISSREARTKL VSFVCK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835974.1	1e-132	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A0K9QT83	0.0	A0A0K9QT83_SPIOL; Uncharacterized protein
STRING	XP_010672213.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-92	FAR1 family protein