PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_141520_uowm.t1
Common NameSOVF_141520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 636aa    MW: 66873.4 Da    PI: 7.951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_141520_uowm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.7e-12175220145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                        r++W++eEd+ l+ av+++G g+W++I +     +R+++q+  rw 
  Sp_141520_uowm.t1 175 RKPWSEEEDQELITAVQKFGEGSWAAILKAEFkGNRSANQLAQRWS 220
                        789************************7754446***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.3442573IPR017877Myb-like domain
PROSITE profilePS5129418.412170227IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-14172223IPR009057Homeodomain-like
SuperFamilySSF466897.59E-13172224IPR009057Homeodomain-like
SMARTSM007173.6E-11174225IPR001005SANT/Myb domain
PfamPF002492.1E-11175219IPR001005SANT/Myb domain
CDDcd116601.32E-14176224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MVDAREKKLK KVAVTEEDVC TLLQRYTATT VLALLREVAQ FPVVKIDWQA LVENSKTGIK  60
TARECQMLWR HLAYRKPLIE SVDPEDQPMD DDSDLEYELE ACPPVSDEAA IEASNCVKVL  120
ASGLANESGV PNSSTAEGRT LNVPSSNVPS ENLQAAGTFG EGLDANGLPI NRKRRKPWSE  180
EEDQELITAV QKFGEGSWAA ILKAEFKGNR SANQLAQRWS VIRKRQGSLN IGGTKIAIPQ  240
LTEAQLATRH ALDMAFKDIS TGCGTVGNET TGTKTPKTIA PKSELPVSGA TVPPSKQHPS  300
PLTSTSALKS APLASTPKSR PQKKAAQPNI SADSIHAAAV AAGARIASPS DAASLFMAVQ  360
SKNAVHIRGG SSLIKTSAAK SSSPLPPNVH FIRTGLASTS TSTATASLSA GQQAKGSSVL  420
SPPVPPAAVV SQPPVPPAAV SPVPPAAVVS QPPVPPAAVS QPPVPAKTTS AAGMERINAA  480
QQMENRTSTV VKVQSSDTKP ATRLQEDKNP SLPQCLPKTQ LDKCQATTSD ADVVSVGKQI  540
ADVGSSQCET IKTVARNEQK DDGCKQVSDN AVVKIVNENL SVVVQTLQST TVPTTGVDGV  600
AENVNGTHED PTTEVDGVAE KMNDSRNIKI SNQTRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855518.10.0uncharacterized protein PB18E9.04c-like
TrEMBLA0A0K9QVI70.0A0A0K9QVI7_SPIOL; Uncharacterized protein
STRINGXP_010692386.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.12e-55MYB_related family protein