PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G58220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 834aa MW: 86281.5 Da PI: 10.5984 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.6e-11 | 195 | 239 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++eEde l+ avk++G g+W++I+++ Rt+ q+ rw AT1G58220.1 195 RKKWSAEEDEELIAAVKRHGEGSWALISKEEFeGERTASQLSQRW 239 789*************************98777789999999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-15 | 189 | 244 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.475 | 190 | 247 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.45E-12 | 191 | 245 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-10 | 194 | 245 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-9 | 195 | 239 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.72E-13 | 196 | 239 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MVDNSNNKKR KEFISEADIA TLLQRYDTVT ILKLLQEMAY YAEAKMNWNE LVKKTSTGIT 60 SAREYQLLWR HLAYRDSLVP VGNNARVLDD DSDMECELEA SPGVSVDVVT EAVAHVKVMA 120 ASYVPSESDI PEDSTVEAPL TINIPYSLHR GPQEPSDSYW SSRGMNITFP VFLPKAAEGH 180 NGNGLASSLA PRKRRKKWSA EEDEELIAAV KRHGEGSWAL ISKEEFEGER TASQLSQRWG 240 AIRRRTDTSN TSTQTGLQRT EAQMAANRAL SLAVGNRLPS KKLAVGMTPM LSSGTIKGAQ 300 ANGASSGSTL QGQQQPQPQI QALSRATTSV PVAKSRVPVK KTTGNSTSRA DLMVTANSVA 360 AAACMSGLAT AVTVPKIEPG KNAVSALVPK TEPVKTASTV SMPRPSGISS ALNTEPVKTA 420 VAASLPRSSG IISAPKVEPV KTAASAASLP RPSGMISAPK VEPVKTTASV ASLPRPSGII 480 SAPKAEPVKT AASAASSPRP SGMISAPKVE SVKTTASMPR PSGIISAPKA ELVKSAASAA 540 SLPCTSGIIS SPKAELVKSA ASAASFPRPS SMLSAPKADP VKIVPAAATN TKSVGPLNLR 600 HAVNGSPNHT IPSSPFTKPL HMAPLSKGST IQSNSVPPSF ASSRLVPTQR APAATVVTPQ 660 KPSVVAAATV VTPQKPSVGA AATVVTPQKP SVGAAANVVT PQKPSVGSAA TVVTPQKPSV 720 GAAVTVTSKP VGVQKEQTQG NRASPLVTAT LPPNKTIPAN SVIGTAKAVA AKVETPPSLM 780 PKKNEVVGSC TDKSSLDKPP EKESTTTVSP LAVAATKSKP KDEATVTGTG LKEL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27969 | 0.0 | flower| seed| silique| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30696228 | 0.0 | ||||
Genevisible | 256198_at | 0.0 | ||||
Expression Atlas | AT1G58220 | - | ||||
AtGenExpress | AT1G58220 | - | ||||
ATTED-II | AT1G58220 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G58220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | abscisic acid, jasmonic acid, salicylic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G58220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117128 | 0.0 | AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10. | |||
GenBank | AY519547 | 0.0 | AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds. | |||
GenBank | BT005971 | 0.0 | BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_176118.2 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | Q8GZ96 | 0.0 | Q8GZ96_ARATH; At1g58220 | ||||
STRING | AT1G58220.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4823 | 27 | 51 | Representative plant | OGRP5923 | 15 | 20 |
Link Out ? help Back to Top | |
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Phytozome | AT1G58220.1 |
Entrez Gene | 842189 |
iHOP | AT1G58220 |
wikigenes | AT1G58220 |
Publications ? help Back to Top | |||
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