PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_141110_tori.t1
Common NameSOVF_141110
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 914aa    MW: 100653 Da    PI: 5.1556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_141110_tori.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-174494155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Sp_141110_tori.t1 44 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 94
                       68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-114494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3045103IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2045103IPR016177DNA-binding domain
PROSITE profilePS5103222.87945102IPR001471AP2/ERF domain
SMARTSM003801.1E-3345108IPR001471AP2/ERF domain
CDDcd000181.27E-2746104No hitNo description
PRINTSPR003671.7E-84657IPR001471AP2/ERF domain
PRINTSPR003671.7E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MMEIQIPING NDGNKRSSST TASDPNSDPA KTPKRARDLG GKHPVYRGVR MRTWGKWVSE  60
IREPRKKSRI WLGTFPNPEM AARAHDVAAL SIKGDSAILN FPELAGLLPR PVSKSPRDVQ  120
AAAAKAAAME NIHNNITPSS SGSLSLSSSS SSSSALLSSC SSLSLMVSAM EIENSDELSE  180
IVKLPSLGPV GNSAELTGNE FVYQYEFDNG WIYHHTPWMQ CMEDFEVVPE NVISTGFEVT  240
IMASDELAGA GDDPPPPGGE GGVKVVGPHT IILRAFFRNG LSCRLSGLAS KYGVKSPYML  300
VEPGAAATGY KVISGLVSNQ HTFRGEFVYV YNQELDTWDF ALVPTLAEPN LHMNRQVDQM  360
DDIEALAALY FRSRMVIEPC GTVSVLPMYW VPGRDELRHE EFMCVVGLNY RYSKELTRCE  420
DPMASHITKV QLLRAQIQAK MASGALKAPP PPVDHKKAPR RVQASAGKAP SVVHVEESDH  480
EGDDHMVEDN NVPLQADGAE SAFAGEGHDS SPASKKRKAG EGQPWGPDDP PFMVISEKDH  540
FKRLTRSLDV LFTPADDEYF EGIPQDEELD GFHMAWAELS VRAAAMAKRK HHLRSMEVEL  600
DGLRKQKEDL SIRMSDLEAE NQRMESELEA AEEKSAKWKN SHDRVKARYM SCKTSYAKTK  660
KQVDKLEEEL LVAQAESKEP KDGPAYIEAW KESEAGAAYS ASVGQQSFTL GEESTLDKMR  720
RSRSDWLGRT LXSCKASYAK TKKQVDKLEE ELLVAQAESK EPKDGPAYIE AWKESEAMAA  780
YSASVGQQCF TLGEESTLDK MRELFARRLP SADFAVFEED YRAMKLAEEE ALMSDMLREE  840
QERLAREDVA GAVTESMTAE AGGPAAEPSS RVVSSQGPPT RTCRGDPKKV RSDREALHHV  900
REPGVSLGCS SASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1836102572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9QU220.0A0A0K9QU22_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-50ERF family protein