PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_137700_zxdt.t3 | ||||||||
Common Name | SOVF_137700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | CPP | ||||||||
Protein Properties | Length: 751aa MW: 83433.4 Da PI: 6.8423 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.8 | 7e-16 | 474 | 512 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YCeCfaag +C e C+C+dC+Nk Sp_137700_zxdt.t3 474 SCKRCNCKRSKCLKLYCECFAAGLYCVEPCNCQDCFNKP 512 689**********************************96 PP | |||||||
2 | TCR | 51.2 | 2.5e-16 | 558 | 597 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN+ Sp_137700_zxdt.t3 558 RHKRGCNCKKSGCLKKYCECYQGGVGCSLSCRCEGCKNTF 597 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.2E-17 | 473 | 514 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.392 | 474 | 598 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.5E-11 | 476 | 511 | IPR005172 | CRC domain |
SMART | SM01114 | 4.9E-18 | 558 | 599 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.5E-12 | 560 | 596 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MDTPDKSTAT QPSPSSFLSK FEDSPVFNYI STLSPIKPFS LGHSTQPLHL NFSSPQAFKT 60 PPTSYLREPK FTRASHVTEV SKNNFSYNGS EGKNAETSTA IEPADLQTEE VDKTDRNVTV 120 STTDESSKLV SEIPRPLKYE CDSPENNGVH CDAVKTHREF IVAGTELFLE KVNQDNSKEE 180 DCSFGKEMGM QAIRMAQNKE ACEWDEFVCE ASDILNGHSP TKENYHDDPE DSIANSGMLS 240 FVATVLQPPN EQKTDVACPD LSEHHHLEVP MNKPAENRNT NERSQMSAND TRTVLDEEIV 300 HHFRTTIDDK QETTRRRCLV YEMSGSHYRK LLASSPNKAA GSSSFSNNKS LMASRPGGNK 360 FSSALPGIGL HLNALAAAAK DKIIVKRQTL NCTRQLISSP CTTSSFDYLI SDTKSHTTQM 420 APVVVKTEAG EQKDEVQVSG DVSENSVVGE GIEFSQSSPK KKRRKAENAE ETDSCKRCNC 480 KRSKCLKLYC ECFAAGLYCV EPCNCQDCFN KPVHEEIVLE TRRQIESRNP LAFAPKVIRC 540 SGTPNSLEEL NKTPASARHK RGCNCKKSGC LKKYCECYQG GVGCSLSCRC EGCKNTFGRK 600 EGSERIVFEE TRFFQRNASD ISSHSDVPIT DKENHDQATS EPSMNARQPF NFGGMAPRFP 660 TLPNGHFPQS CTSQNIDNSD KIKIAVPEDE ALKGDYLLPT TYVKSASPNC KRISPHFETS 720 PGWKSCRKLI LRSLPAFTVD KESKQLLEKL Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-16 | 476 | 595 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-16 | 476 | 595 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 459 | 463 | KKKRR |
2 | 459 | 464 | KKKRRK |
3 | 460 | 464 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021866890.1 | 0.0 | CRC domain-containing protein TSO1-like isoform X2 | ||||
TrEMBL | A0A0K9QV85 | 0.0 | A0A0K9QV85_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675092.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-90 | Tesmin/TSO1-like CXC domain-containing protein |