PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_135390_aamj.t1
Common NameSOVF_135390
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 456aa    MW: 52185.9 Da    PI: 7.0842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_135390_aamj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.49.2e-92714453374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL ec++a+s+g+ ++ q+lL+ l+e as +gd  qRla yf++AL a+ ++s+ + y++++  e++++  ++ ++ +  f+evsP+ +f+
  Sp_135390_aamj.t1  71 SLLCECVKAISQGNPSKSQQLLWVLNEVASAYGDCDQRLAYYFLQALFAKANNSGLQFYSTIKFVEEKNYCFDTYVKLMLKFQEVSPWTTFG 162
                        79*****************************************************************98889999999988*********** PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakr 185
                        h++ N aIlea+ege+ +HiiD++ + ++QWp Ll++La+R++++p+lR+T v++ +s +   ++e+ ++++kfA+ +gvpf+f+v+   + 
  Sp_135390_aamj.t1 163 HVASNGAILEALEGENNLHIIDLSNTLCTQWPMLLESLATRNDETPHLRLTLVVP-TSLEIIITKEISKKMEKFARLMGVPFKFHVIsGLDC 253
                        *****************************************************99.66799999**********************844568 PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleak 274
                        l ++++e+L ++ gEa++Vn++ +l+r++     + ++r++v+++++s++P+vv++ve+e+d+   +s++F + f e+l++y   f++le++
  Sp_135390_aamj.t1 254 LGQIKIEDLCLQDGEAVVVNCIQALQRVH-----V-DKRRDVIDMIRSIKPRVVTIVEEEVDLttiTSSDFGKCFEECLKFYKLYFEMLEES 339
                        8999************************8.....4.44889*******************886445789*********************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve...eesgslv 359
                        +p+ s+er k+E +  +r+ivn++ace+ e      r  ++++W++r+ +  F+p ++++++  ++++llr+++  +   +    +++  + 
  Sp_135390_aamj.t1 340 FPPISNERLKLESK-RSRNIVNALACENGEigeEYWRPDKASQWSKRFLNQAFTPFHYNDEILGDVRALLRRYNtRWDLALPqqhDHQVGIH 430
                        **************.9***********988432455899***********************************666666554323355566 PP

               GRAS 360 lgWkdrpLvsvSaWr 374
                        l Wkd+p+v++SaW+
  Sp_135390_aamj.t1 431 LKWKDEPVVWASAWK 445
                        **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.75843421IPR005202Transcription factor GRAS
PfamPF035143.2E-8971445IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPYSIENPLS LRSDHSLVPK RSTSFPLQLP GKWLMNQTIK KPLKNVHHRE SSICPPSSST  60
DNKSCVGWVS SLLCECVKAI SQGNPSKSQQ LLWVLNEVAS AYGDCDQRLA YYFLQALFAK  120
ANNSGLQFYS TIKFVEEKNY CFDTYVKLML KFQEVSPWTT FGHVASNGAI LEALEGENNL  180
HIIDLSNTLC TQWPMLLESL ATRNDETPHL RLTLVVPTSL EIIITKEISK KMEKFARLMG  240
VPFKFHVISG LDCLGQIKIE DLCLQDGEAV VVNCIQALQR VHVDKRRDVI DMIRSIKPRV  300
VTIVEEEVDL TTITSSDFGK CFEECLKFYK LYFEMLEESF PPISNERLKL ESKRSRNIVN  360
ALACENGEIG EEYWRPDKAS QWSKRFLNQA FTPFHYNDEI LGDVRALLRR YNTRWDLALP  420
QQHDHQVGIH LKWKDEPVVW ASAWKPNLSA SPPNPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1174744762475Protein SHORT-ROOT
5b3h_B1e-118474478421Protein SHORT-ROOT
5b3h_E1e-118474478421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863426.10.0protein SHORT-ROOT-like
TrEMBLA0A0K9QY050.0A0A0K9QY05_SPIOL; Uncharacterized protein
STRINGXP_010672262.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-119GRAS family protein