PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_134990_htfp.t1
Common NameSOVF_134990
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 387aa    MW: 42982.5 Da    PI: 4.5354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_134990_htfp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19127176255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Sp_134990_htfp.t1 127 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 176
                        89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-30126184IPR001471AP2/ERF domain
PfamPF008471.1E-12127176IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21127184IPR016177DNA-binding domain
PROSITE profilePS5103223.947127184IPR001471AP2/ERF domain
SMARTSM003803.4E-39127190IPR001471AP2/ERF domain
CDDcd000182.73E-33127184No hitNo description
PRINTSPR003674.5E-10128139IPR001471AP2/ERF domain
PRINTSPR003674.5E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDYSQLLCPV KYTEHRSVTK KQNLIKPTKK SVPKPPPRVV RVSVVDNDAT DSSSDEEAEI  60
FGRHRVRRYL NEIVIEQTTS LTTNAVAAVP PVVAPVCKKG GSRKKSTNTA ATPQPGGVLM  120
TSGGVRKFRG VRQRPWGKWA AEIRDPARRV RLWLGTYDTA EEAAMVYDNA AIKLRGPDAL  180
TNFATPPPRE PPPPVVVEAH APSTSTGYES GDESASHNLL CSPTSVLHFR GGSEELSRFK  240
PDIEPEPENE LIFPVHEPST THSVSTSSTS CYNLEECQGE SSSNIGDLLD TPFLNDFFNF  300
ETPEPMIFDD SKSSESLFTI SDDNDQQFHH QFDFGDVFDD SFMDDFDFST MNNNINNNDY  360
SSSNMLQVDD YFQDINDIFA SDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21126183159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840114.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A0K9QW280.0A0A0K9QW28_SPIOL; Uncharacterized protein
STRINGXP_010671529.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-53cytokinin response factor 4