PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_134890_nniw.t1 | ||||||||
Common Name | SOVF_134890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | YABBY | ||||||||
Protein Properties | Length: 229aa MW: 25463.7 Da PI: 9.6323 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222.5 | 1.2e-68 | 18 | 187 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes..hldeslkee.lleelkveeenlksnvekeesa 92 f sseq+Cy+qC+ C+t+lavsvPs+sl+k+vtvrCGhCt+ll vn + + + hl++++ + + l+ ++ ++ Sp_134890_nniw.t1 18 FPSSEQLCYLQCSRCDTVLAVSVPSSSLYKTVTVRCGHCTHLLPVNTRSLLPPPPPPNqlHLSHNFFSPtSHYRLGEMPNQSPNFSLTQPGG 109 789*******************************************9999966555551156666554425555555555555555555555 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +ls+ +e+prvp ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl Sp_134890_nniw.t1 110 ASNYMTPTLSRGGANELPRVPTTNRPPEKRQRVPSAYNRFIKDEIQRIKAQNPDITHREAFSAAAKNWAHFPHIHFGL 187 555666789*******************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-65 | 20 | 187 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-8 | 132 | 180 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.7E-5 | 136 | 179 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 2.84E-5 | 141 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSSSTSSTIT TNLSLDPFPS SEQLCYLQCS RCDTVLAVSV PSSSLYKTVT VRCGHCTHLL 60 PVNTRSLLPP PPPPNQLHLS HNFFSPTSHY RLGEMPNQSP NFSLTQPGGA SNYMTPTLSR 120 GGANELPRVP TTNRPPEKRQ RVPSAYNRFI KDEIQRIKAQ NPDITHREAF SAAAKNWAHF 180 PHIHFGLMPD QTVKRTSNMR PHHPQEAGED VRMRTGYYGA QANVGVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021855930.1 | 1e-171 | axial regulator YABBY 5-like | ||||
Swissprot | O22152 | 5e-70 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A0K9QY62 | 1e-169 | A0A0K9QY62_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676177.1 | 1e-127 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-72 | YABBY family protein |