PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_134460_ghud.t1
Common NameSOVF_134460
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 385aa    MW: 43341.8 Da    PI: 8.5808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_134460_ghud.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07220242123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  Sp_134460_ghud.t1 220 HYCQVCGKGFKRDANLRMHMRAH 242
                        68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-6218245No hitNo description
Gene3DG3DSA:3.30.160.609.4E-7220249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653220247IPR007087Zinc finger, C2H2
SMARTSM003550.0034220242IPR015880Zinc finger, C2H2-like
PfamPF128740.0023221240No hitNo description
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SMARTSM0035583273306IPR015880Zinc finger, C2H2-like
SMARTSM0035521311333IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIHGEASCFP NTSEAEGGIQ HPSQLYDDVM EASFSGGSGG GGSETQLRSL LCSLSVLKHK  60
VESLVSLFLT QESHHQPAAT LLSTTTSPVA FASLGTLIQE VVVTASSMMF NCQQMTLSSN  120
NSNRNTDSDH MQQQRPDDGL RQIGVDKNNN NQGFMNNWYT DNTTTCNNNY IIARTESSSK  180
LFKDGKTQTR NKMSRDRKSL TEAYDLVEPD AADLLAKYTH YCQVCGKGFK RDANLRMHMR  240
AHGDEYKSTA ALSNPLKKET DDQNSAMKTP RKYSCPEMGC RWNKNHAKFQ PLKSIICVKN  300
HYKRSHCPKM YVCKRCNRKQ FSVVSDLRTH EKHCGDRKWQ CSCGTTFSRK DKLMGHVTLF  360
LGHTPIIVDT NFHNHGELQI QFQDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848286.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A0K9QW940.0A0A0K9QW94_SPIOL; Uncharacterized protein
STRINGXP_010667294.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.18e-97C2H2 family protein