PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_133560_dkuj.t1

Common Name

SOVF_133560

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 354aa MW: 36602.6 Da PI: 6.8961

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_133560_dkuj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.3	3.3e-35	70	140	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+ ai+e+tgt++++a ++ Sp_133560_dkuj.t1 70 VRKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIKWLLERAEGAIIEATGTGTIPAIAV 140 79*************************************************************99999544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.4E-29	75	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.305	75	129	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEDEENNSHN SSSNNENTNN SRNSGGFPFD PFPPVDQSES TAFSTAALKV EPIDAVTLAA 60 PPPPLPPPMV RKRPSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIKWLLE 120 RAEGAIIEAT GTGTIPAIAV SVNGTLKIPT TPAGGRDDDY GGKKRRRTNN SDFVDLADVS 180 VGGGGGGVSL SSGLAPITAA NTAAALGFSS AQAPGHHPPP PQGLVPIWPA NFFMLPNAAG 240 IGGGGQQPQF WATPVFGLAA AARPISSFVS EVVQASSGVS NGGNAPPTTA STTTTNLLDF 300 SLEIYDNNKR ELQLMSSRPM NSIHQGISHE QQGGGGGGGS NTTPTPPSSS SQAV

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEDEENNSHN SSSNNENTNN SRNSGGFPFD PFPPVDQSES TAFSTAALKV EPIDAVTLAA  60
PPPPLPPPMV RKRPSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIKWLLE  120
RAEGAIIEAT GTGTIPAIAV SVNGTLKIPT TPAGGRDDDY GGKKRRRTNN SDFVDLADVS  180
VGGGGGGVSL SSGLAPITAA NTAAALGFSS AQAPGHHPPP PQGLVPIWPA NFFMLPNAAG  240
IGGGGQQPQF WATPVFGLAA AARPISSFVS EVVQASSGVS NGGNAPPTTA STTTTNLLDF  300
SLEIYDNNKR ELQLMSSRPM NSIHQGISHE QQGGGGGGGS NTTPTPPSSS SQAV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842292.1	0.0	transcription factor TCP19
Swissprot	Q9LT89	6e-67	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A0K9QYN3	0.0	A0A0K9QYN3_SPIOL; Uncharacterized protein
STRING	XP_010693449.1	1e-111	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-50	TCP family protein