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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sp_132790_ckrd.t1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | B3 | ||||||||
| Protein Properties | Length: 1129aa MW: 128930 Da PI: 9.0956 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 45 | 1.9e-14 | 64 | 153 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
+kv+++s+v+ l+lp +f+++h +k++ + ++le+ +g+++e ++ + ++ l++GWk+F+ +L+egD+vvF+l++ +f +
Sp_132790_ckrd.t1 64 VKVMVKSNVSGGFFLRLPPPFCRAHLPVKNR-TVMVLETDTGERYEANY--LPQYCG--LSGGWKRFAIVMKLEEGDTVVFQLVEPAKF--K 148
699**********************656544.5888999**********..666666..9**********************9875555..7 PP
EEEE- CS
B3 94 vkvfr 98
v ++r
Sp_132790_ckrd.t1 149 VYFIR 153
76665 PP
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| 2 | B3 | 39.2 | 1.3e-12 | 252 | 333 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+v+ + l+lp ++++ h +++++le e+g++++ k+ +s++ l++GW F+ +L+egD++vF+l++ +f +v ++r
Sp_132790_ckrd.t1 252 NVSHGCSLILPEQYCSVHLP--VIETDMVLEIETGEQYTTKY--LPRSCK--LSDGWHMFATNMRLEEGDVIVFHLVEAAKF--KVYFIR 333
6788899********98853..46679***************..888866..***********************9876666..666665 PP
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| 3 | B3 | 33.3 | 8.4e-11 | 390 | 467 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+l+ p +f+++h + +++tl++++e+g+++e ++ + r + +++Wk+F +++L++gD vvF+l++ ++f +v ++r+
Sp_132790_ckrd.t1 390 ILSPPTPFCRAHLPQ--KDTTLVFQTETGEQYEANY--LARYLR-FGGGCWKRFPLDKELEAGDAVVFHLVEVTKF--KVYIIRA 467
4555999*****533..6789***************..444444.46889*******************9987777..9998886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 3.14E-17 | 57 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.4E-15 | 57 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 1.1E-16 | 63 | 155 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.307 | 63 | 155 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 8.48E-20 | 64 | 153 | No hit | No description |
| Pfam | PF02362 | 4.2E-13 | 64 | 153 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 5.69E-14 | 238 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.1E-13 | 240 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 10.123 | 244 | 335 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 9.9E-6 | 244 | 335 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 5.38E-15 | 248 | 333 | No hit | No description |
| Pfam | PF02362 | 1.2E-10 | 252 | 333 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.35E-13 | 370 | 474 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.2E-12 | 371 | 468 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.24E-11 | 373 | 466 | No hit | No description |
| SMART | SM01019 | 2.4E-8 | 375 | 468 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 10.038 | 376 | 468 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.0E-8 | 391 | 467 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF56574 | 1.83E-45 | 790 | 1116 | IPR023796 | Serpin domain |
| Gene3D | G3DSA:3.30.497.10 | 1.2E-38 | 813 | 1060 | No hit | No description |
| Pfam | PF00079 | 2.2E-31 | 817 | 983 | IPR023796 | Serpin domain |
| SMART | SM00093 | 6.7E-8 | 826 | 1119 | IPR023796 | Serpin domain |
| Pfam | PF00079 | 2.6E-7 | 1041 | 1117 | IPR023796 | Serpin domain |
| Gene3D | G3DSA:2.30.39.10 | 1.7E-8 | 1061 | 1117 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1129 aa Download sequence Send to blast |
MRNPGKQKEV KAENFNNNST KQKKLWAEKI RRKYMRLSRV LRKCNSIQAT KIQSKLNVEH 60 PATVKVMVKS NVSGGFFLRL PPPFCRAHLP VKNRTVMVLE TDTGERYEAN YLPQYCGLSG 120 GWKRFAIVMK LEEGDTVVFQ LVEPAKFKVY FIRVNSTNEV HLPFHLLNLV NRVESGVSRK 180 AGKNQKSFYR SEEVHQNYLQ GKQKDFGTEK IRRKDLLVPQ VLGKSNLVHA KNIQSELDFK 240 HPLTLQGLKK WNVSHGCSLI LPEQYCSVHL PVIETDMVLE IETGEQYTTK YLPRSCKLSD 300 GWHMFATNMR LEEGDVIVFH LVEAAKFKVY FIRVNSANEV NLSPHILNTF QKCDMTQSKR 360 SLSNLIVEHP DIPVTVKWLP KSCTSSSCFI LSPPTPFCRA HLPQKDTTLV FQTETGEQYE 420 ANYLARYLRF GGGCWKRFPL DKELEAGDAV VFHLVEVTKF KVYIIRANAS EVNLPVHLLE 480 LLGHVQQSVS GKPDSKQQTV DRREVNQREH NRRKSARLNP RNTEVSTVLL HEKMIFSNIN 540 SFEEFKSVMN ELIQNQKLPY YAMHGYYELC CNQKEFLHAR LSVLINPRLT NQVIIGVIRR 600 IIFDIVNITD ALTTCELSTF LHNYALWDES LKTYETLGMN VGFLLARLHH LEKVAVSSES 660 AADRCRYEEA CHENLRAKSE VRKLDLILAK LQTLKLKPRD ETYRKAEISE LEVMISGFGK 720 FFLQYDAHIE TLKLKVKTHE LKFQEEVSSS XLLPLARAFC TRPAFSLLNN FAYHRLLRIS 780 SEGISTNTFR QQQQHSYTTS LPSITCKDLN KKLPHDHDFS FDLAKQSLLH GLKRTPQENL 840 LCSPVSTSAV LNMLVPGSKG QTLDQFLDVL GLKEENLNKS ATKLIDVVRP LFKVGGDGAE 900 ISFSNGVWVD REYPLMRSYK EVLDSVHEAD VKSVDFLYKT DEVKEEIDLW GRTKTKGMIK 960 NILQETSYYN DTVMVLANAL HFKFESSYEI VDLSKTQPLL HYCGSFDGSE VLRMPYKQGC 1020 RTNKATLQKA GKMELIKILD SPVSELLYVT DITQKSRIET SEGGTSFSVV TYTSLCGPSH 1080 RCSPVLPSKV NFVAENPFMF MIREDFSGGV VSVGTMLSTS LSSQEVLHA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3le2_A | 6e-22 | 808 | 1019 | 4 | 230 | Serpin-ZX |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021862879.1 | 0.0 | B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
| TrEMBL | A0A0K9QUI8 | 0.0 | A0A0K9QUI8_SPIOL; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19184.1 | 6e-28 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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