PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_132280_cdhh.t1 | ||||||||
Common Name | SOVF_132280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 27261.7 Da PI: 7.5003 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.5 | 3.9e-37 | 32 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l++eA r+rdPvyG+v++i++lqqq+ +++ Sp_132280_cdhh.t1 32 PCGACKYLRRKCVKGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHRRLDAVVTLCFEALSRVRDPVYGCVAHIFTLQQQVLNMQ 123 7***********************9989**************************************************************** PP DUF260 92 aelallkee 100 aela ++++ Sp_132280_cdhh.t1 124 AELAFVQAR 132 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.338 | 31 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-36 | 32 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSNHQQQNNN NQWHGGDGGG GSSNNGGGLG GPCGACKYLR RKCVKGCVFA PYFDSEQGTA 60 HFAAVHKVFG ASNASKLLLR IPAHRRLDAV VTLCFEALSR VRDPVYGCVA HIFTLQQQVL 120 NMQAELAFVQ ARLSTLQRLP ATYPAVDHQT PTTPCCLDQI SASSGINTST TNAVTSSMPL 180 FDNFALHSQP TLSSLAAAPP VTAAELASYC NISDYQQFQH HDLIFEDGDL QTLTREFVSK 240 YLPGVKFKSE PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 28 | 126 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 28 | 126 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021858931.1 | 0.0 | LOB domain-containing protein 31-like | ||||
Swissprot | O81322 | 2e-67 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A0K9QWU8 | 0.0 | A0A0K9QWU8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692268.1 | 1e-125 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-65 | LOB domain-containing protein 31 |