PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_128700_dopc.t2

Common Name

SOVF_128700

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 429aa MW: 48971.1 Da PI: 8.4045

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_128700_dopc.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.5e-14	96	184	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+l++s+v+ +++lp +f+++h ++ tle+ s + ++ k+ ++++ l++GWk+F+ + +L egD +vF+l+++++f Sp_128700_dopc.t2 96 FVKALVKSHVTGCFWMRLPAPFCQTHLP--VIDTFFTLETHSKKLYKAKY--LASRQG--LSGGWKGFAVSERLLEGDALVFHLISDTKF-- 179 89**********************53..36678***********..777777..9**********************98888.. PP EEEEE CS B3 93 vvkvf 97 +v v+ Sp_128700_dopc.t2 180 KVYVI 184 66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-17	88	187	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.73E-21	89	186	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.22E-20	94	185	No hit	No description
Pfam	PF02362	9.2E-13	96	184	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.532	96	187	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-14	96	187	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MSSPSSPHPI PVPFQVFHLQ AESSKLLKNK RSNRNSIKRT WSHLIPCFET GLRHQHRKPK 60 RRRPTGLESA DKIFKSAVIN QAEEFQSKLD PEYPSFVKAL VKSHVTGCFW MRLPAPFCQT 120 HLPVIDTFFT LETHSKKLYK AKYLASRQGL SGGWKGFAVS ERLLEGDALV FHLISDTKFK 180 VYVIKENNLT EVDGTLSSIN LNTHEIQSDP GIVDQTSMQP PQNSESNSTG NSGRVVDGFP 240 IYEEATLSPN TVSTFENFSI VINDLLKDYE LPRHIKWSYY KLCCSQDALL HEQLPQWMNH 300 ILVGGIIIET VTIADALRQC ELSTPKEEFA VWDKTLSALE LLGMNVGFLR THQHRLQRIV 360 HDPEVAIVKQ KCLELCAENS RAEDEIRSLT ARLVEMKKVH IKRATDIDNL KSKLSNHEIR 420 FQELVHTPW

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MSSPSSPHPI PVPFQVFHLQ AESSKLLKNK RSNRNSIKRT WSHLIPCFET GLRHQHRKPK  60
RRRPTGLESA DKIFKSAVIN QAEEFQSKLD PEYPSFVKAL VKSHVTGCFW MRLPAPFCQT  120
HLPVIDTFFT LETHSKKLYK AKYLASRQGL SGGWKGFAVS ERLLEGDALV FHLISDTKFK  180
VYVIKENNLT EVDGTLSSIN LNTHEIQSDP GIVDQTSMQP PQNSESNSTG NSGRVVDGFP  240
IYEEATLSPN TVSTFENFSI VINDLLKDYE LPRHIKWSYY KLCCSQDALL HEQLPQWMNH  300
ILVGGIIIET VTIADALRQC ELSTPKEEFA VWDKTLSALE LLGMNVGFLR THQHRLQRIV  360
HDPEVAIVKQ KCLELCAENS RAEDEIRSLT ARLVEMKKVH IKRATDIDNL KSKLSNHEIR  420
FQELVHTPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852301.1	0.0	B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A0K9QY04	0.0	A0A0K9QY04_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-39	B3 family protein