PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_126370_jrrz.t1

Common Name

SOVF_126370

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LBD

Protein Properties

Length: 339aa MW: 36879 Da PI: 6.566

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_126370_jrrz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.9	1.7e-43	6	104	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp++fanvhk+FGasnv kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q+++ Sp_126370_jrrz.t1 6 PCAACKFLRRKCTQECVFAPYFPPDQPQRFANVHKVFGASNVAKLLHDLNVSQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQS 97 7******************************************************************************************* PP DUF260 93 elallke 99 +l ++k+ Sp_126370_jrrz.t1 98 DLYVAKK 104 *998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.606	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSSNSPCAAC KFLRRKCTQE CVFAPYFPPD QPQRFANVHK VFGASNVAKL LHDLNVSQRE 60 DAVNSLAYEA EARLRDPVYG CVGLISILQQ RLKQVQSDLY VAKKDLSTYI GPTALMPMIQ 120 TGYANSSMQQ HYNMGPMMGI NIPTGVAAGP SHGGGGGGGG SGGGQLVIRD SQQQQHLIEA 180 QQLAALAVRD EQEMMRNWEQ QQQQQQQQQF MRFNGSGGGG GYDGAVVVGG GGFNQVGSSS 240 AVTSPSLALG AATFDPNAYN QIQQQQQQQQ QPQQDESLGQ LLLLQQPATP QQQQVHGEHN 300 PQHQPLLLHQ QHHHLEHNPQ QQPQRAGSEE EDRTIGPAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	3	115	8	126	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	3	115	8	126	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835695.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	9e-72	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0K9QYP5	0.0	A0A0K9QYP5_SPIOL; Uncharacterized protein
STRING	XP_010687953.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-70	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]