PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_126100_ygxu.t1 | ||||||||
Common Name | SOVF_126100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 247aa MW: 27499.8 Da PI: 6.1719 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 145.8 | 9.3e-46 | 64 | 156 | 2 | 94 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 req+ ++Pianv+ri+++ lP nak++++ake+vqecvsefisf+tsea++ cq e+rkti+++d++ a++ lGf++yvepl++yl+kyre Sp_126100_ygxu.t1 64 REQELYMPIANVVRIIRQGLPPNAKVADEAKEMVQECVSEFISFITSEANETCQLEHRKTITAEDVIRAMSRLGFDHYVEPLTIYLQKYRES 155 89****************************************************************************************98 PP NF-YB 94 e 94 e Sp_126100_ygxu.t1 156 E 156 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.2E-46 | 60 | 156 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.26E-35 | 66 | 157 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.8E-23 | 70 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.5E-16 | 97 | 115 | No hit | No description |
PRINTS | PR00615 | 1.5E-16 | 116 | 134 | No hit | No description |
PRINTS | PR00615 | 1.5E-16 | 135 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MPLVGNADGL DNRMANNIQS SMQNHFESKH DQTQINISNN KNHDLHTNHK TPKLGSKAPK 60 AAFREQELYM PIANVVRIIR QGLPPNAKVA DEAKEMVQEC VSEFISFITS EANETCQLEH 120 RKTITAEDVI RAMSRLGFDH YVEPLTIYLQ KYRESEMLPP IPRHGVGNMG LESGNVLPPF 180 AVVHPQFSMF KTSSENQGLY TATVCDGSGP RLGLGIGGES NDSEATDPSE SPHAGQYFYN 240 PYGYYRS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-42 | 64 | 154 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021850640.1 | 0.0 | nuclear transcription factor Y subunit B-5-like | ||||
TrEMBL | A0A0K9R0E7 | 0.0 | A0A0K9R0E7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669682.1 | 1e-113 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21970.1 | 6e-45 | NF-YB family protein |