PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_124480_fggd.t1
Common NameSOVF_124480
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92245.2 Da    PI: 6.5423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_124480_fggd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.88e-183895457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+++Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sp_124480_fggd.t1 38 YVRYTAEQVDALERVYAECPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 95
                       5789****************************************************97 PP
2START157.88.5e-501763802204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ ++g a+ra+g+v  ++    +e+l+d++ W +++++ e+      g  g++
  Sp_124480_fggd.t1 176 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCNGVAARACGLVSLEPS-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTI 266
                        7899******************************************************.7777777777***********999999999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                        +l++++ +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++   +++  ++++Ra +lpSg+li+p+++g+s +++v+h +l++++++++lr
  Sp_124480_fggd.t1 267 ELIYTQIYAPTTLAPaRDFWTLRYTTTLENGSIVVCERSLSGSGPNTAAPQFIRADMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLR 358
                        *********************************************999******************************************** PP

                        HHHHHHHHHHHHHHHHHTXXXX CS
              START 183 slvksglaegaktwvatlqrqc 204
                        +l++s+ + ++k++ a+l++ +
  Sp_124480_fggd.t1 359 PLYQSSKVVAQKMTIAALRYIR 380
                        *****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-181695IPR009057Homeodomain-like
PROSITE profilePS5007115.1593296IPR001356Homeobox domain
SMARTSM003893.0E-1534100IPR001356Homeobox domain
CDDcd000861.95E-153797No hitNo description
SuperFamilySSF466894.71E-163798IPR009057Homeodomain-like
PfamPF000462.2E-153895IPR001356Homeobox domain
CDDcd146864.90E-689128No hitNo description
PROSITE profilePS5084825.951166391IPR002913START domain
CDDcd088755.00E-70170383No hitNo description
Gene3DG3DSA:3.30.530.202.6E-19175363IPR023393START-like domain
SuperFamilySSF559613.85E-35175384No hitNo description
SMARTSM002349.9E-40175382IPR002913START domain
PfamPF018521.9E-47176380IPR002913START domain
PfamPF086703.6E-48702845IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MAMVAHRESS SGSGGSSGMS KHLAAAAAAA SSADAGKYVR YTAEQVDALE RVYAECPKPS  60
SLRRQQLIRE CPILSHIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLS AMNKLLMEEN  120
DRLQKQVSHL VCENGFMRQQ LHTPPTAATD GSCESVVTTT QHTLGDTNNP AGLLSIAEET  180
LAEFLSKATG TAVDWVQMPG MKPGPDSVGI FAISHRCNGV AARACGLVSL EPSKIAEILK  240
DRPSWFRDCR SLEVFTMFPA GNGGTIELIY TQIYAPTTLA PARDFWTLRY TTTLENGSIV  300
VCERSLSGSG PNTAAPQFIR ADMLPSGYLI RPCDGGGSII HIVDHLNLEA WSVPEVLRPL  360
YQSSKVVAQK MTIAALRYIR QIAQETSGEV VYSLGRQPAV LRTFSQRLSR GFNDAINGFP  420
DDGWTLLTCD GAEDVIISCN SAKNFMATLN AASSLPMVGG VLCAKASMLL QNVPPAVLVR  480
FLREHRSEWA DFSVDAYSAA ALKSNAYAFP GMRATRFTGS QIIMPLGHTI ENEEMLEVIR  540
LEGHSLSPED AYISRDIHLL QICSGIDENA VGACSELVFA PIDEMFPDDA PLVPSGFRII  600
PLDSKPETAT NRTLDLTSSL EVGPSTNHGA ADATSGNTRS VLTIAFQFPF EISLQENVAT  660
MARQYVRTVI SSVQRVATAI SPSGLSPTVG PRLSPGSPEA LTLAHWICRS YSYHMGTELL  720
RTSSASDDTV LKHLWHHQDA IVCCSLKSLP VLIFANQAGL DMLETTLVAL QDVTLDKIFD  780
ESGRKSLCSD FPKIMQLGYA YLPAGVCTST MGRHVSYDQA IAWKVFAADE TTVHCLAFTF  840
VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858740.10.0homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0K9QZ930.0A0A0K9QZ93_SPIOL; Uncharacterized protein
STRINGXP_010689538.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]