PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_121640_wusi.t1
Common NameSOVF_121640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 272aa    MW: 31512.7 Da    PI: 7.5143
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_121640_wusi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-20666257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++R+++t+eq+ +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Sp_121640_wusi.t1  6 STRWCPTPEQVMILEEMYRGgVRTPNAAQIQQITSHLslygKIEGKNVFYWFQNHKARDRQ 66
                       58*****************99*************************************996 PP
2Wus_type_Homeobox119.12e-38567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+PtpeQ++iLee+y+ G+rtPn+++iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk
  Sp_121640_wusi.t1  5 ASTRWCPTPEQVMILEEMYRGGVRTPNAAQIQQITSHLSLYGKIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.912267IPR001356Homeobox domain
SMARTSM003895.5E-6471IPR001356Homeobox domain
PfamPF000468.7E-18766IPR001356Homeobox domain
CDDcd000861.34E-4767No hitNo description
SuperFamilySSF466897.27E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSPAASTRWC PTPEQVMILE EMYRGGVRTP NAAQIQQITS HLSLYGKIEG KNVFYWFQNH  60
KARDRQKLRK KLLGKQLQQH NQLMFSSHHH HHNHMFPPFD HHQHFQHHSN FLHHLNFDQP  120
LPLPPSLPLP LPLPLPLPLP PPLSCCGPTP SSLGLFHHQL PPVVNSPCFA AHQTRAEDTL  180
VPRMTNTYTW NQEYTSDAKY GMENTMPMMK SMITNHDYDD DWMAVRSGDH HHHDNHDHDD  240
EYHPSRRPLK TLELFPVNDK TSLKDGHGLS LV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856279.10.0WUSCHEL-related homeobox 3-like
TrEMBLA0A0K9R2640.0A0A0K9R264_SPIOL; Uncharacterized protein
STRINGXP_010686181.13e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-34WOX family protein