PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_121260_adfm.t1
Common NameSOVF_121260
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 593aa    MW: 64963.6 Da    PI: 6.8375
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_121260_adfm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.22.3e-21130232199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f kvltpsd+++ g +++p+ +a+++         ++ +   +++ d +g +W +++iyr++++r++lt+GW++Fv+ ++L +gD+vvF ++
  Sp_121260_adfm.t1 130 FGKVLTPSDANNGGGFSVPRFCADSIfppldfaADPPVQ--NIRIVDVQGIVWIFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDTVVFIRK 219
                        679********************999*****97666666..69999********************************************65 PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +  ++el+v+++r+
  Sp_121260_adfm.t1 220 K-LTGELFVGIRRA 232
                        5.8999*****986 PP
2Auxin_resp54.26.2e-19277359383
         Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvs.dldpvrWpnSkWrsLk 83 
                        ++a ++ +FevvY+Pr +  e vv + k e+a+++++++  R+k+a eted s+ ++  G v+++    dp +W++S Wr+L+
  Sp_121260_adfm.t1 277 ERALKGLPFEVVYYPRPGMFECVVAAGKAEAACSKHWAPDVRVKLAQETEDGSRMTWyNGKVASLVvGPDPGSWRGSCWRMLE 359
                        6677899**************************************************99***9965157************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-25125234IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-30129232IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-21129231No hitNo description
PROSITE profilePS5086311.829130233IPR003340B3 DNA binding domain
SMARTSM010195.7E-17130233IPR003340B3 DNA binding domain
PfamPF023621.5E-19130232IPR003340B3 DNA binding domain
PfamPF065072.3E-16276358IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MESDGQRRCH YQPQQQQQQL QPKEVDPGMW LCCAGSLIQT SNVNSRVYYF PQGHIEQASG  60
PVSLSERVTS QPFVHSRVLE VLFLADPITD EVFVNYRLQP LNPTGITYEG PATADGGGGG  120
GGGVNGFVSF GKVLTPSDAN NGGGFSVPRF CADSIFPPLD FAADPPVQNI RIVDVQGIVW  180
IFRHIYRGTP RRHLLTTGWS KFVNGKKLIA GDTVVFIRKK LTGELFVGIR RAYKTPPVLT  240
GAYAALAARP KPSPPVGGFS RTKKGRVPPE AVVEATERAL KGLPFEVVYY PRPGMFECVV  300
AAGKAEAACS KHWAPDVRVK LAQETEDGSR MTWYNGKVAS LVVGPDPGSW RGSCWRMLEV  360
TWDEPELLKN MKTVSPWQVE YVADAPIHGV FPLTKRFKGA QEGVRLTDGE GEISFSSIAF  420
SSMMDKYTPS SYINYNNIPA GMQGARQIPF PLPSSSPIII NDGSSRQRCP DDNVDISQKV  480
VEAQASTDPN VASSYETSSP ESSSSVQLPS KGFTSFQLFG KVIQTELPLL EAPHIELPHI  540
ELPHMGPPFV NRDDISCTEC DDYTTEGARN TVDNSLSETT QSQKLPMRKN YAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-562538051388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847679.10.0auxin response factor 17
TrEMBLA0A0K9R0510.0A0A0K9R051_SPIOL; Auxin response factor
STRINGXP_010672559.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-125auxin response factor 17