PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_116420_qnkp.t1
Common NameSOVF_116420
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 271aa    MW: 29441.9 Da    PI: 4.5696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_116420_qnkp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1855105155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr++  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Sp_116420_qnkp.t1  55 PVYRGVRRRA-WGKWVSEIREPRK---KSRIWLGTFSSPEMAARAHDVAALSIKG 105
                        68*****777.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1355105IPR001471AP2/ERF domain
PROSITE profilePS5103223.60456113IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2156114IPR016177DNA-binding domain
SMARTSM003801.7E-3656119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3156114IPR001471AP2/ERF domain
CDDcd000181.99E-3357115No hitNo description
PRINTSPR003677.6E-105768IPR001471AP2/ERF domain
PRINTSPR003677.6E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAPKHDHRPL YQDNSSDTSS TSNDEALATT TTVDDNNDQI LNISSKKRQR DTKHPVYRGV  60
RRRAWGKWVS EIREPRKKSR IWLGTFSSPE MAARAHDVAA LSIKGSSAVL NFPDLAPSLP  120
RPLSNSPRDV QHAAAKAAAL EFNITTFTTE ENTSSSSTAT TPAGATTQEH VTNSSNSTAT  180
TTTTNVAPAS PSTSSSTALS SDSAAMSGDE EEQLLGEIVE LPSLEDESGF DSAEFVDTTW  240
LMYEYYDSDP LLQCWVNHGN TSVTEGYFGE Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19541131272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852240.11e-142ethylene-responsive transcription factor ERF043-like
TrEMBLA0A0K9R3G00.0A0A0K9R3G0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688291.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-41ERF family protein