PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_116310_qchc.t1

Common Name

SOVF_116310

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 314aa MW: 35306.6 Da PI: 8.4758

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_116310_qchc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.6	4.1e-36	55	112	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + ++l+cprC+s+ntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Sp_116310_qchc.t1 55 QPEQLNCPRCESSNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 112 57899***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-31	58	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.316	59	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-22	59	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGLSSKQVSS DRHGWNQALL QASNLELPNP PSSLKRQQPQ QQQQQHQQQG QQQQQPEQLN 60 CPRCESSNTK FCYYNNYNKS QPRHFCKACK RHWTKGGTLR NVPVGGGRKN KRLKASNSGS 120 KTASKTKSST TNNTSNDNVK ALIQSQQRQQ QQPPTRFSLP LGEASLINGF DEKNTTFSEA 180 FYQTLGRQPP SSLPETSITF NNKSLTDGIF LSLPQNNNDQ EHLQFPYTNL GNFENNPSSI 240 SSSNFYNFTG DHHQNHQISA NGLEESVINT SNSSSMSVID MSSNWGWDDF DKFVSVEADL 300 TMPWDETEIK LPSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856379.1	0.0	dof zinc finger protein DOF3.1-like
TrEMBL	A0A0K9R3V0	0.0	A0A0K9R3V0_SPIOL; Uncharacterized protein
STRING	XP_010686557.1	1e-123	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	3e-28	Dof family protein