PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_115280_sysi.t1
Common NameSOVF_115280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 420aa    MW: 47724.7 Da    PI: 8.5927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_115280_sysi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-1657147199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f k l++s+v    ++ lp++f++ +  +  +++  tlede+g+++  k+     +  + +++GW++F  a++L egD++vF+l++ ++f  
  Sp_115280_sysi.t1  57 FTKPLLKSHVAGCFWMGLPNPFCKMYLPQ--RETYFTLEDENGNKYGAKY--LAAK--TAFSGGWRRFSLAKKLSEGDVLVFQLVKPTKF-- 140
                        899********************999533..5568***************..5555..3499*********************9987777.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v ++rk
  Sp_115280_sysi.t1 141 KVYILRK 147
                        8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-1954147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2254147IPR015300DNA-binding pseudobarrel domain
CDDcd100179.79E-2555146No hitNo description
SMARTSM010194.1E-1957148IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05557148IPR003340B3 DNA binding domain
PfamPF023621.1E-1357147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKELKTNIRN FKKKLSASPS KGLNYQQKQA KRGNIKSSVL RQAEELRSRL EAIYPSFTKP  60
LLKSHVAGCF WMGLPNPFCK MYLPQRETYF TLEDENGNKY GAKYLAAKTA FSGGWRRFSL  120
AKKLSEGDVL VFQLVKPTKF KVYILRKCNV TEKTVTRVIQ NLPTEVVRND QEVGTLEQAI  180
EAQRPSSLSA IAQDKDQEAP SKEHPQILQQ EKTSEIERTE LNSGKSKHLL FSASVDGNGI  240
ASFEEFLIVI DDFLKNKYDL PHNIKCSYYE LCCSQGALLH NNNLMKGINP VLVAGSIIET  300
VNVATAIKSC NLQTFNDEFS VWHVKLKSLK ILGMKVEFLV SRLEHLQRAA SDAEAAKNKQ  360
QYLDLCSEHD VSESEIKDVE EKIRELVSVF DKCFDEIEGL KLEIENHESR FQKQVSALTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859856.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0K9R2630.0A0A0K9R263_SPIOL; Uncharacterized protein
STRINGXP_010666629.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-35B3 family protein