PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_115210_owps.t1

Common Name

SOVF_115210

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NAC

Protein Properties

Length: 288aa MW: 33181.9 Da PI: 5.9711

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_115210_owps.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.9	1.9e-40	11	146	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +pGfrF Pt+eel+++yL++k++g+ ++e vi+ v iy+++PwdLp+ +++ + +ew+fF+++++++ +g r+nr t++gyWkat Sp_115210_owps.t1 11 APGFRFYPTEEELISFYLQEKLQGRGgQDIEGVIPVVYIYDYNPWDLPQlsgercRCDPQVQEWFFFTPKQERQVKGGRPNRLTTTGYWKAT 102 59********************997888889***********65677655555888************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127 g+ v+s+ +++ +g+k+t+vfy+g r+++g+kt+W m+ey Sp_115210_owps.t1 103 GSPGYVYSSsDNKIIGVKRTMVFYHGraRSRSGSKTEWKMNEYM 146 ***9977888******763377899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-42	8	174	IPR003441	NAC domain
PROSITE profile	PS51005	46.261	10	174	IPR003441	NAC domain
Pfam	PF02365	2.0E-22	12	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGDIVDEIME APGFRFYPTE EELISFYLQE KLQGRGGQDI EGVIPVVYIY DYNPWDLPQL 60 SGERCRCDPQ VQEWFFFTPK QERQVKGGRP NRLTTTGYWK ATGSPGYVYS SSDNKIIGVK 120 RTMVFYHGRA RSRSGSKTEW KMNEYMAIDH QPSSSTNPIP SQKGEFTICR VYIKSKCLRA 180 FDRRPAAPPM NTPALLSAQQ VDHNQPSSSD QHQIQARSMV EIRRCRSSES SWSSGEEAAV 240 NNNNNNDATQ GLNNNQVNII MDMECDQQQP LWEWDDSWMN HWNLSTHY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-28	3	174	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-28	3	174	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-28	3	174	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-28	3	174	10	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-27	3	174	13	168	NAC domain-containing protein 19
3swm_B	1e-27	3	174	13	168	NAC domain-containing protein 19
3swm_C	1e-27	3	174	13	168	NAC domain-containing protein 19
3swm_D	1e-27	3	174	13	168	NAC domain-containing protein 19
3swp_A	1e-27	3	174	13	168	NAC domain-containing protein 19
3swp_B	1e-27	3	174	13	168	NAC domain-containing protein 19
3swp_C	1e-27	3	174	13	168	NAC domain-containing protein 19
3swp_D	1e-27	3	174	13	168	NAC domain-containing protein 19
4dul_A	9e-28	3	174	10	165	NAC domain-containing protein 19
4dul_B	9e-28	3	174	10	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851789.1	0.0	NAC domain-containing protein 90-like
TrEMBL	A0A0K9R252	0.0	A0A0K9R252_SPIOL; Uncharacterized protein
STRING	XP_010683676.1	1e-137	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-66	NAC domain containing protein 90