PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_112560_upqa.t1
Common NameSOVF_112560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 277aa    MW: 30241.4 Da    PI: 8.3336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_112560_upqa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-202878155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++ a+++++g
  Sp_112560_upqa.t1 28 THFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAARAYDDAARAFRG 78
                       589*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-132878IPR001471AP2/ERF domain
CDDcd000188.99E-222886No hitNo description
SMARTSM003807.8E-392992IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-222987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-322986IPR001471AP2/ERF domain
PROSITE profilePS5103223.4992986IPR001471AP2/ERF domain
PRINTSPR003676.2E-113041IPR001471AP2/ERF domain
PRINTSPR003676.2E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAPKVNGVGG GVGVKVNAVN GGVNVKETHF RGVRKRPWGR YAAEIRDPTK KSRVWLGTFD  60
TAEEAARAYD DAARAFRGAK AKTNFPLPSE IQINAPLNHH HHHHFNHNQN TNLSCNNNNN  120
NHSPSQSSTV ESSSHEKPSS IPAPTTAGMV DSLPLDLNLA GNFAGAAAVG VRFPFQQVRV  180
AQAPAVGFPA QMNQFFYFDA VARQNQHHHH HLQQPQYINN QQIRFHQMVA SELHAPPTCG  240
VQSDSDSSSV VDFNQDLNSA PRGLEIDLNH PPPSDLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-222987261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840409.10.0ethylene-responsive transcription factor 4-like
TrEMBLA0A0K9R4L70.0A0A0K9R4L7_SPIOL; Uncharacterized protein
STRINGXP_010686416.12e-74(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9