PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_110210_upnr.t1 | ||||||||
Common Name | SOVF_110210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | DBB | ||||||||
Protein Properties | Length: 239aa MW: 26570.9 Da PI: 4.5399 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 6.8e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+++++ C ++ lC++C +e H H++ Sp_110210_upnr.t1 4 QCDVCERNPATVICCADEAALCAKCDTEVHAAnklaskHQR 44 7*****************************65677777776 PP | |||||||
2 | zf-B_box | 31.2 | 4.6e-10 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ ++ek + +fC +++ l+C+dC +++H H Sp_110210_upnr.t1 53 KLPTCDICQEKTAFIFCVEDRALFCQDCDESIHAAatlaanH 94 689******************************655555556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.29E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-5 | 4 | 45 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.414 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.2E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.3E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.79E-8 | 57 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKIQCDVCER NPATVICCAD EAALCAKCDT EVHAANKLAS KHQRLQLNQL SSKLPTCDIC 60 QEKTAFIFCV EDRALFCQDC DESIHAAATL AANHQRYLAT GIRVALGCLS KCKNETENNC 120 TEPSNQNEQQ VASLKQTVQQ PAAFSPPSSW AVDDFLEFPD FESANKKLGE FDWWSDVFGE 180 QIPHEALAAA EVPQLPMSIP SSNTIQYRPP KMSMPNKKPR IEISHDDDDE YSIVPDLGY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839238.1 | 1e-179 | B-box zinc finger protein 24-like | ||||
Swissprot | Q96288 | 4e-90 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A0K9R5E7 | 1e-177 | A0A0K9R5E7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672230.1 | 1e-143 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 2e-92 | DBB family protein |
Publications ? help Back to Top | |||
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