PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_109740_ghki.t1
Common NameSOVF_109740
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 383aa    MW: 43049.4 Da    PI: 6.8842
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_109740_ghki.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.77.1e-2298157357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Sp_109740_ghki.t1  98 SRWNPTPEQLRALEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 157
                        7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-3797159365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Sp_109740_ghki.t1  97 SSRWNPTPEQLRALEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 159
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.07893158IPR001356Homeobox domain
SMARTSM003894.4E-695162IPR001356Homeobox domain
PfamPF000461.7E-1998157IPR001356Homeobox domain
SuperFamilySSF466893.04E-1298163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-998157IPR009057Homeodomain-like
CDDcd000861.21E-699159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MMGYNEVANQ DLNLGDPFKG SRKLRPLVPR PYLSSPPNHH NVNTTCLTGF HNPTSHHHLF  60
SFNNTAATLN HHHNHHPHFV GPEEGKETVG THQVMVSSRW NPTPEQLRAL EELYRRGTRT  120
PSADQIQHIT AQLRRYGKIE GKNVFYWFQN HKARERQKRR RQLQLPLPPS SGSSSGGNRI  180
GFEVEQKSSK WAPSSTNKEE DHSDPATQIA EETGLSKATA TTEMMIQFHQ SPEFQHNHNI  240
NHNNIMTNNF NINSTAATNL LFAAEKNSTW QTHNNNNMMV QPSSCSCCCY PSPPPPSLPL  300
FSLSSKPNYN SSSNIITASK GGNNLFGRLG ESPSASSSPT LQLFPVEKDD DEDEDEDEDN  360
SCVTCNDDKA MPSNNPFPYY EFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845007.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A0K9R3X60.0A0A0K9R3X6_SPIOL; Uncharacterized protein
STRINGXP_010688870.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-39WUSCHEL related homeobox 1