PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_108670_uuee.t1 | ||||||||
Common Name | SOVF_108670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WOX | ||||||||
Protein Properties | Length: 239aa MW: 27252.5 Da PI: 9.7571 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.5 | 1.7e-21 | 90 | 149 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Sp_108670_uuee.t1 90 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEQLskygKIEGKNVFYWFQNHKARERQ 149 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 119.1 | 2e-38 | 90 | 151 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqkq Sp_108670_uuee.t1 90 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEQLSKYGKIEGKNVFYWFQNHKARERQKQ 151 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.58E-12 | 83 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.657 | 85 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-6 | 87 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.62E-5 | 90 | 151 | No hit | No description |
Pfam | PF00046 | 3.6E-19 | 90 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-8 | 91 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGSSSMKVHP FARGFWDNHQ SHDPQAGFSL GCKRFRPLAP KVNTNNVVAT PCFDLKSFIK 60 PDNGPRNHVS PCHLNNHSPS HQVESQAGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ 120 ITEQLSKYGK IEGKNVFYWF QNHKARERQK QKRTNLGLSH YPRTPTAATA TAATATTQVD 180 TSITLTLDTK FSLQADIEEQ QMSPYKRKYR NWLTFESSDE NPQKEDKTLE LFPLHPEGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021838300.1 | 0.0 | WUSCHEL-related homeobox 4 isoform X1 | ||||
Swissprot | Q6X7J9 | 1e-68 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A0K9R3T8 | 0.0 | A0A0K9R3T8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010688717.1 | 1e-104 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 7e-68 | WUSCHEL related homeobox 4 |