PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_108370_teay.t1
Common NameSOVF_108370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 442aa    MW: 48546 Da    PI: 6.2943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_108370_teay.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-165397147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT+eE++++++a k++G   W++I  ++g  +t+ q++s+ qk+
  Sp_108370_teay.t1 53 RERWTEEEHKKFLEALKLYGRA-WRKIEDHVG-SKTAVQIRSHAQKF 97
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.36E-1647101IPR009057Homeodomain-like
PROSITE profilePS5129421.23148102IPR017930Myb domain
TIGRFAMsTIGR015574.1E-1751100IPR006447Myb domain, plants
SMARTSM007172.2E-1352100IPR001005SANT/Myb domain
PfamPF002491.5E-135396IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-95393IPR009057Homeodomain-like
CDDcd001671.93E-105598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPCSSSTMVT QEETSVAQSD SGNRNSSVAG AQTGVGEGQI PKIRKPYTIT KQRERWTEEE  60
HKKFLEALKL YGRAWRKIED HVGSKTAVQI RSHAQKFFSK VVRETNNSNA NSVADPIEIP  120
PPRPKRKPSH PYPRKLVLPS RKDMPMEQGS RSVSPNSSLS EQENQSPTSV LSAAASDMLA  180
SADSAAPKSS PSPVSSGNFG DQVAKLQSED NAPQGEVQES KSGSTVPASV KLELFPVKES  240
VHKEESACTK VLKLFGKDVV VPGNPESFTS LSKSPSLDMG EGVLQAGPED FQAADNSVRI  300
VGNAQDHMKF YYVDKNANQV EKPTPLPWWV FFRGMSVPPF VETQEKETQR EGSSGESNSD  360
SVNGGETQDK NWETETESGQ CGPVSDKEIK FVEDSPSLIE KRSSVDKCRK GFVPYKRCLS  420
ERDMESTIGS EDRESQRVRL CL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856034.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A0K9R4830.0A0A0K9R483_SPIOL; Uncharacterized protein
STRINGXP_010675239.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.19e-43MYB_related family protein