PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_108110_cazn.t1 | ||||||||
Common Name | SOVF_108110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 340aa MW: 38228.1 Da PI: 4.4759 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 98 | 151 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Sp_108110_cazn.t1 98 KKRRLTVHQVQFLEKSFEVDNKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 151 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.9 | 3.8e-40 | 97 | 189 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe ++kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkd+++L+++++ lk++ e+L +e+e+L++e+ Sp_108110_cazn.t1 97 EKKRRLTVHQVQFLEKSFEVDNKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDFDSLQSNFNDLKSDYENLLQEKEKLQAEVV 188 69**************************************************************************************9986 PP HD-ZIP_I/II 93 e 93 + Sp_108110_cazn.t1 189 Q 189 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-20 | 84 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-20 | 96 | 157 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-17 | 98 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.68E-18 | 98 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 103 | 152 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 124 | 133 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 133 | 149 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-14 | 153 | 194 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MAGAGVGRVF GGGSSGGCGG NGSVGASLLF NQRLPRSSQS PEPFFISGSS STFLGSSSMV 60 SFEDVVGGKR SERPFFCTYD QEENGDEDFD DYFHQPEKKR RLTVHQVQFL EKSFEVDNKL 120 EPERKVQLAK DLGLQPRQVA IWFQNRRARW KTKQLEKDFD SLQSNFNDLK SDYENLLQEK 180 EKLQAEVVQL TDKLLLKEKK QGEHSAPFNT NIEPKTVQEE PIVESASETE DHLVSVFGCK 240 QEDLSSVKSD VIDSDSPHYV DAATHSPFGE PSETYAFEAD HSDISQDDED YLSKSLLPSS 300 HVFMKIGDVD YPDPPANNYG LQGEDHASLF WPYWDINLKM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021850966.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A0K9R4D1 | 0.0 | A0A0K9R4D1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678585.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-45 | homeobox 1 |