PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_107270_idzz.t1
Common NameSOVF_107270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 318aa    MW: 35938.3 Da    PI: 9.1509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_107270_idzz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-121950132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       +g+WT+eEd+ll+++v+++G g+W++++r  g
  Sp_107270_idzz.t1 19 KGPWTPEEDKLLIEYVNLHGEGRWSSVSRSAG 50
                       79***************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-13948IPR009057Homeodomain-like
PROSITE profilePS5129412.6411465IPR017930Myb domain
SuperFamilySSF466891.72E-91450IPR009057Homeodomain-like
SMARTSM007174.2E-41860IPR001005SANT/Myb domain
PfamPF002499.3E-111950IPR001005SANT/Myb domain
CDDcd001674.96E-82147No hitNo description
SuperFamilySSF1415712.88E-84999No hitNo description
PfamPF008051.1E-76398IPR001646Pentapeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVGGFMAAWS CVQHQGWRKG PWTPEEDKLL IEYVNLHGEG RWSSVSRSAG ADCSDTLMDR  60
LVLNEANLTN AVLVRSVLTR SDLTGALIQG ADFSDVVLDY PQKLVKLDFT ATLITTQQPK  120
KKRQAMIFQI FQLFSQASDL ETNLDKSNIY ISGVPGVVQT QILTCLGIPV GVFPFRYLGV  180
PQSTKNIYAE RLQLVKIILL SLQSYWCPIF VLPNKVIKEV QSYYRVFLWT DEISPSKRAL  240
VSSANMYLPR KSPSRSQVPS NAHFQIQVSS NSRFQFSGLN RRLHRGVDRD LSNSQASNCR  300
YFECLHLELG ISNFFTLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9R6A00.0A0A0K9R6A0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-14myb domain protein 305