PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sp_107060_rtie.t1 | ||||||||
Common Name | SOVF_107060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26447.5 Da PI: 10.3991 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.5e-13 | 3 | 77 | 17 | 96 |
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++pk f+e+ g+k+ es+ lt + r W vk+ ++++ +++GW+eF++ gLk+gDf+vF ++ + + v+v Sp_107060_rtie.t1 3 SIPKAFLEKElkGYKPIESVVLTTDYQPHRHWLVKV--EGGR---AFKEGWNEFCSHYGLKAGDFLVFAHQLN--LMFQVSV 77 7******9999888888886666666777*******..6665...589*********************6543..3335555 PP | |||||||
2 | B3 | 55.2 | 1.3e-17 | 140 | 217 | 9 | 87 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ++++s +++lpk f++e g+++++ ++l +g+ Wevkl+yrk++++ ++++GWkeF an L+ +D++ F+l +r Sp_107060_rtie.t1 140 YAFTSTNVYLPKWFVRESGLENRCC-VIKLIGGEGKAWEVKLRYRKYDSQAFIKGGWKEFQAANSLRPRDIICFQLLER 217 6788889***********9998775.9************************************************8764 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.421 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.07 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-12 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.71E-11 | 3 | 79 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-11 | 3 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.5E-9 | 3 | 71 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.14E-15 | 130 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.308 | 132 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-9 | 139 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 140 | 217 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-14 | 143 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.72E-17 | 148 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MQSIPKAFLE KELKGYKPIE SVVLTTDYQP HRHWLVKVEG GRAFKEGWNE FCSHYGLKAG 60 DFLVFAHQLN LMFQVSVFDP LTACHRSFSS SNHIIGSNTK RRGSKKLRSS YEISGKRRSS 120 KANPSVKDQQ LSCRITLSFY AFTSTNVYLP KWFVRESGLE NRCCVIKLIG GEGKAWEVKL 180 RYRKYDSQAF IKGGWKEFQA ANSLRPRDII CFQLLERGRW PIMNCYRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010693056.1 | 4e-81 | PREDICTED: uncharacterized protein LOC104906051 | ||||
TrEMBL | A0A0K9R6S2 | 1e-170 | A0A0K9R6S2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693056.1 | 2e-80 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31620.1 | 9e-24 | B3 family protein |