PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_105450_wuip.t1
Common NameSOVF_105450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 337aa    MW: 37613.3 Da    PI: 9.5624
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_105450_wuip.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.51.1e-1539122186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  v  L+ea+++++   +r+klk+++We+v+k++       +  ++++qCk+k+e+++kry+ + ++         s++p+f++l+
  Sp_105450_wuip.t1  39 EWSEGAVSSLLEAYESKWILRNRAKLKGQDWEDVAKHVssrsNNIKSPKTQTQCKNKIESMKKRYRSESATTDT------SSWPLFSRLD 122
                        5*************************************87766777788999***************9998885......57*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-2037124No hitNo description
SuperFamilySSF1014472.41E-5163178No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MERETNQDDQ NPSPTILEQS PRKPLLVSGS GGDRLKRDEW SEGAVSSLLE AYESKWILRN  60
RAKLKGQDWE DVAKHVSSRS NNIKSPKTQT QCKNKIESMK KRYRSESATT DTSSWPLFSR  120
LDNLLRGTGL PQAQSSPIKA IAVASNPGLV LESSPVAQHL PLPPPPPPPP PPPLHVPPQQ  180
ASPPVEIAQN SLESNGVEPM AKDDDEVAEK VSDKNHVDNQ IETDSSTPAL YSNDKDGPKL  240
KKSMKMKRKK RRREGSNSWE DVSESIRWLA EAVVRSEQVR MDTMRELERM RGEAEAKRGE  300
MDLKRTEIIS NTQLEIARLF ATTAGKNVDS SLRIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246252KRKKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862422.10.0trihelix transcription factor ASIL2
TrEMBLA0A0K9R5820.0A0A0K9R582_SPIOL; Uncharacterized protein
STRINGXP_010670500.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-95sequence-specific DNA binding transcription factors