PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_105280_gdhp.t1
Common NameSOVF_105280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 560aa    MW: 65184 Da    PI: 8.3837
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_105280_gdhp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.5e-2260143189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        ++Yn YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++ +w++ ++ leHnH l
  Sp_105280_gdhp.t1  60 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLVDSRRWRILEVTLEHNHLL 143
                        69*****************************************9988.....99*********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-1960143IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.977441477IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-4451473IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-6452479IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEEESGNIGL VRDVDVSITL ESESDRGELV TQNIEETDGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSKEKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV  120
RMRLVDSRRW RILEVTLEHN HLLGQKMYKT IKTVEADTKR KSLVSSNAEG HTIKLYKAVF  180
IDSSDTGYLN TGSKETHSFS NHPNQLHLKK GHSPQTIITD RSQTLRNAIT EVFPRSLHRY  240
GISLIMRKVP ENLGGLRNYD AIRKTFTKAV YETLKVGEFE AAWGLMVQQF GISNHEWLRS  300
LYEDRARWAP VYLKDTFFAG MSTAQPADIL HPFFEKYVHK QTPLKEFLDK YELALHKKHK  360
EETLSDIESR NSSSLLKTRC SFEQQLSKIY TKEIFLKFQL EVEEMYSCFS TTQLHVDGPY  420
IIFLVKERFL GEGNRREIRD YEVYYNRGSA EVRCICSCFN FNGYLCRHAL CVLNFNGVEE  480
IPVKYILSRW KKDYKRLCVL DHANSNIDIN DRIQWSGQLY RSALRVVEEG VISLDHYSSA  540
SQAFEESLNR VHNVEEKHET
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029147830.10.0protein FAR1-RELATED SEQUENCE 6 isoform X3
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A0K9R5900.0A0A0K9R590_SPIOL; Uncharacterized protein
STRINGXP_010691105.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]