PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_100990_zinp.t1 | ||||||||
Common Name | SOVF_100990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WOX | ||||||||
Protein Properties | Length: 224aa MW: 24314.6 Da PI: 8.9549 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.4 | 7.7e-16 | 48 | 108 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ Sp_100990_zinp.t1 48 RSRWTPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 108 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 108 | 5.5e-35 | 47 | 110 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Sp_100990_zinp.t1 47 VRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 110 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.01E-14 | 44 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.451 | 44 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-6 | 46 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-9 | 48 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-13 | 48 | 108 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEDHHQATKT TSNNISTTTT TASTSSSSKG GGDRTSTSTT TSGGEPVRSR WTPKPEQILI 60 LESIFNSGMV NPPKEETVRI RKLLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQASLAAS 120 VATPTQTPPQ QPPPHPGYFD LGHHRTTSTC TIPTSSSSGV TCFAPCNSTS SSTTFCDYGG 180 GVVDDVFGNY SGQMDLVNST NHQMDHRSSN SSNIDFQSGK LNLT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021853045.1 | 1e-161 | WUSCHEL-related homeobox 11-like | ||||
TrEMBL | A0A0K9R6J5 | 1e-164 | A0A0K9R6J5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677789.1 | 3e-46 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 3e-35 | WUSCHEL related homeobox 11 |