PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_097980_epxn.t1

Common Name

SOVF_097980

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

G2-like

Protein Properties

Length: 290aa MW: 32164.1 Da PI: 7.2382

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_097980_epxn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	2.9e-33	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sp_097980_epxn.t1 33 KQRLRWTEELHNRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.437	30	90	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-32	31	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-18	32	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-26	33	88	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	6.4E-24	122	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MPHKTQGSEP VANAGAMGNS SMKNSPPPGG SGKQRLRWTE ELHNRFVDAI TQLGGPDRAT 60 PKGVLRVMGV PGLTIYHVKS HLQKYRLAKY LPESPGDGTV GAKDEKKVSL DGLNADSSQG 120 LQINEALKMQ MEVQKRLHEQ LEVQRQLQMR IEAQGKYLQK IIEEQQKLGS VLRASEALPS 180 SNDEEEEREK SLDSQPGGRE EASTSPRKKQ KLDDSSTSNV VDTLPLPLPL PVHLENSPKK 240 AHLDQWGRSL YGCPAGFGLD LETEFKKQEN SEREREQRIP SELDYPGSSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	32	90	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860832.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_021860833.1	0.0	myb family transcription factor PHL7-like isoform X1
TrEMBL	A0A0K9R8Z4	0.0	A0A0K9R8Z4_SPIOL; Uncharacterized protein
STRING	XP_010673242.1	1e-164	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-71	G2-like family protein