PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_093910_ngfy.t1
Common NameSOVF_093910
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 459aa    MW: 53536.6 Da    PI: 8.6254
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_093910_ngfy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07253293346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT+eE e  ++ ++++G++ Wk+ + ++g  + + ++k+ w+ 
  Sp_093910_ngfy.t1 253 KWTEEEVEHVKKFHEKHGPD-WKRCSVELG--KHRFHVKDVWRR 293
                        8*****************88.********9..677888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.81177248IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.600.001180266IPR009057Homeodomain-like
SMARTSM007170.63250297IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-7252312IPR009057Homeodomain-like
PROSITE profilePS500905.68253295IPR017877Myb-like domain
PfamPF139212.1E-9254312No hitNo description
Gene3DG3DSA:1.10.10.608.6E-6267304IPR009057Homeodomain-like
PROSITE profilePS500907.352296364IPR017877Myb-like domain
SMARTSM0071710300366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-5305365IPR009057Homeodomain-like
PROSITE profilePS500906.806366419IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNIKGRMSGT DLIENQLDAE VIENVQPVKD KKKKRKKKDD KELGKSIRSA SMDNSEKCRG  60
KGSKKRKEKS QGCDTEGDAN AGLFENNERN ETTEPSENTK SHKKAKKVKF SENVEVFPLP  120
DVSSKGKKKK VVDKSEKKKK VADRSEKKKK VADRSEEKKK VEDGSEEKTN VDNGLIQGKR  180
FSKEEDEIIQ NAVYQFIEDR QLGEEGVEML MNSKSHRELR GCWKEIGECL PCRPYVAVYY  240
RAHILFQRSE DRKWTEEEVE HVKKFHEKHG PDWKRCSVEL GKHRFHVKDV WRRIKLPNRK  300
NGNWSQDEYQ NLFNLVNMDL SMKAFTEKKS KHGMLRDNIC WEAISEQLTT RSNALCCMKW  360
YDSLTSPMVA EGKWANVDDY RMLIALVDLD EACEDDVDWD NLLEHRSGDV CRKRWNQMVR  420
HIGEYGTKTF IEQVEVLSQR YCPTLLEARE SFDNRPAVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035KKKKRK
23037KKKKRKKK
33137KKKRKKK
43236KKRKK
5127149KKKVVDKSEKKKKVADRSEKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846267.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A0K9RAV40.0A0A0K9RAV4_SPIOL; Uncharacterized protein
STRINGXP_010682330.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-119MYB_related family protein